Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AAFQ93_RS08830 Genome accession   NZ_CP152419
Coordinates   1843455..1844045 (-) Length   196 a.a.
NCBI ID   WP_000613459.1    Uniprot ID   I2J9B0
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838455..1849045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS08805 (AAFQ93_08745) - 1839152..1839916 (-) 765 WP_049503117.1 ABC transporter ATP-binding protein -
  AAFQ93_RS08810 (AAFQ93_08750) - 1839916..1840872 (-) 957 WP_223139993.1 branched-chain amino acid ABC transporter permease -
  AAFQ93_RS08815 (AAFQ93_08755) - 1840876..1841745 (-) 870 WP_000941435.1 branched-chain amino acid ABC transporter permease -
  AAFQ93_RS08820 (AAFQ93_08760) - 1841861..1843021 (-) 1161 WP_223139994.1 ABC transporter substrate-binding protein -
  AAFQ93_RS08825 (AAFQ93_08765) - 1843110..1843379 (-) 270 WP_045763243.1 DUF2129 domain-containing protein -
  AAFQ93_RS08830 (AAFQ93_08770) clpP 1843455..1844045 (-) 591 WP_000613459.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  AAFQ93_RS08835 (AAFQ93_08775) upp 1844218..1844847 (-) 630 WP_000517029.1 uracil phosphoribosyltransferase -
  AAFQ93_RS08840 (AAFQ93_08780) - 1844935..1845402 (-) 468 WP_000136981.1 deaminase -
  AAFQ93_RS08845 (AAFQ93_08785) - 1845421..1845978 (-) 558 WP_000840875.1 TetR/AcrR family transcriptional regulator -
  AAFQ93_RS08850 (AAFQ93_08790) - 1846103..1846948 (+) 846 WP_375555212.1 DegV family protein -
  AAFQ93_RS08855 (AAFQ93_08795) - 1847176..1848354 (+) 1179 WP_375555213.1 NAD(P)/FAD-dependent oxidoreductase -
  AAFQ93_RS08860 (AAFQ93_08800) - 1848393..1848914 (+) 522 WP_375555786.1 DUF1697 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21403.42 Da        Isoelectric Point: 4.4829

>NTDB_id=989190 AAFQ93_RS08830 WP_000613459.1 1843455..1844045(-) (clpP) [Streptococcus nidrosiense strain SO-23-1]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGK
SVEQIHADAERDYWMSAQETLEYGFIDEIMANNSLN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=989190 AAFQ93_RS08830 WP_000613459.1 1843455..1844045(-) (clpP) [Streptococcus nidrosiense strain SO-23-1]
ATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGAGAACGTTCATATGACATTTACTCACGTCTTCTAAAAGATCGTAT
CATCATGTTGACTGGACCAGTCGAAGACAATATGGCAAACTCAGTTATCGCCCAATTGCTATTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTAAATACTCCTGGTGGTTCTGTATCAGCTGGTTTGGCAATCGTTGATACTATGAAC
TTTATTAAGGCAGATGTCCAAACCATCGTTATGGGGATGGCTGCTTCAATGGGAACAATTATTGCCTCAAGTGGAGCAAA
GGGCAAACGTTTCATGCTTCCGAATGCAGAATACATGATTCACCAACCGATGGGTGGTACAGGTGGTGGTACACAGCAAA
CAGATATGGCGATTGCTGCTGAACACTTGCTTAAAACTCGTAAGACTTTGGAGCAAATTCTTGCAGATAATTCTGGTAAA
TCAGTTGAGCAAATCCATGCAGATGCTGAACGTGATTACTGGATGAGCGCTCAAGAAACACTTGAATATGGTTTCATTGA
TGAAATCATGGCTAATAATTCTTTGAATTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2J9B0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

95.408

100

0.954
  clpP Streptococcus pneumoniae D39

95.408

100

0.954
  clpP Streptococcus pneumoniae R6

95.408

100

0.954
  clpP Streptococcus pneumoniae TIGR4

95.408

100

0.954
  clpP Streptococcus thermophilus LMD-9

91.795

99.49

0.913
  clpP Streptococcus thermophilus LMG 18311

91.795

99.49

0.913
  clpP Streptococcus pyogenes JRS4

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

91.795

99.49

0.913
  clpP Streptococcus mutans UA159

89.231

99.49

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

87.692

99.49

0.872
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

97.959

0.561

Multiple sequence alignment