Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHB48_RS20270 Genome accession   NZ_CP152052
Coordinates   4121454..4121963 (-) Length   169 a.a.
NCBI ID   WP_340925030.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4116454..4126963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS20250 (MHB48_20250) rplI 4117441..4117890 (-) 450 WP_340925026.1 50S ribosomal protein L9 -
  MHB48_RS20255 (MHB48_20255) - 4117887..4119863 (-) 1977 WP_342599591.1 DHH family phosphoesterase -
  MHB48_RS20260 (MHB48_20260) - 4119876..4120817 (-) 942 WP_342599592.1 DUF2232 domain-containing protein -
  MHB48_RS20265 (MHB48_20265) rpsR 4121170..4121406 (-) 237 WP_093275428.1 30S ribosomal protein S18 -
  MHB48_RS20270 (MHB48_20270) ssbA 4121454..4121963 (-) 510 WP_340925030.1 single-stranded DNA-binding protein Machinery gene
  MHB48_RS20275 (MHB48_20275) rpsF 4122003..4122311 (-) 309 WP_090567343.1 30S ribosomal protein S6 -
  MHB48_RS20280 (MHB48_20280) - 4122479..4123027 (+) 549 WP_342599593.1 DUF3267 domain-containing protein -
  MHB48_RS20285 (MHB48_20285) ychF 4123326..4124426 (-) 1101 WP_342599594.1 redox-regulated ATPase YchF -
  MHB48_RS20290 (MHB48_20290) - 4124507..4124713 (-) 207 WP_342599595.1 DUF951 domain-containing protein -
  MHB48_RS20295 (MHB48_20295) - 4124730..4125578 (-) 849 WP_342599596.1 mechanosensitive ion channel family protein -
  MHB48_RS20300 (MHB48_20300) yyaC 4125655..4126254 (+) 600 WP_342599597.1 spore protease YyaC -
  MHB48_RS20305 (MHB48_20305) - 4126210..4126914 (-) 705 WP_342599598.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18666.44 Da        Isoelectric Point: 4.7621

>NTDB_id=986994 MHB48_RS20270 WP_340925030.1 4121454..4121963(-) (ssbA) [Psychrobacillus sp. FSL H8-0483]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSSSGDRSQGGQTPSFGGGGQQQNSYPTYQQNQPMNQQNYTRVDEDPFANSSGPI
EVSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=986994 MHB48_RS20270 WP_340925030.1 4121454..4121963(-) (ssbA) [Psychrobacillus sp. FSL H8-0483]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGCTACACGCCAAGTGGTGTTGCAATGGC
AAGATTTACACTAGCTGTAAATCGCACATTCTCCAACCAACAAGGCGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAGCAAGCTGAAAACACAGCTAACTTTTTGAAAAAAGGAAGTTTAGCAGGTGTTGAAGGGCGTATTCAAACGGGT
AGTTATGAAGGACAAGATGGGAAACGTGTTTATACGACAGATGTTGTTGCAGACAGCGTTCAGTTCCTAGAACCACGTAG
TAGCTCTGGTGACCGAAGCCAAGGTGGACAAACACCATCATTTGGCGGCGGTGGACAGCAGCAAAACTCATATCCGACAT
ATCAGCAAAACCAACCAATGAATCAGCAAAATTATACACGTGTAGATGAAGATCCTTTTGCAAATAGTAGTGGACCAATC
GAAGTATCGGATGACGACCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.793

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.722

0.391
  ssb Neisseria meningitidis MC58

35.955

100

0.379
  ssb Neisseria gonorrhoeae MS11

35.955

100

0.379
  ssb Glaesserella parasuis strain SC1401

34.807

100

0.373
  ssb Vibrio cholerae strain A1552

34.239

100

0.373

Multiple sequence alignment