Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NST80_RS09780 Genome accession   NZ_CP152039
Coordinates   2078781..2079881 (-) Length   366 a.a.
NCBI ID   WP_129852292.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2073781..2084881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS09740 (NST80_09740) - 2074390..2074587 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  NST80_RS09745 (NST80_09745) - 2074838..2076031 (-) 1194 WP_048674220.1 acetate kinase -
  NST80_RS09750 (NST80_09750) comYH 2076088..2077044 (-) 957 WP_002887012.1 class I SAM-dependent methyltransferase Machinery gene
  NST80_RS09755 (NST80_09755) comGG 2077089..2077406 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  NST80_RS09760 (NST80_09760) comYF 2077384..2077821 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  NST80_RS09765 (NST80_09765) comGE 2077808..2078038 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  NST80_RS09770 (NST80_09770) comYD 2078070..2078498 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  NST80_RS09775 (NST80_09775) comYC 2078458..2078772 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  NST80_RS09780 (NST80_09780) comYB 2078781..2079881 (-) 1101 WP_129852292.1 competence type IV pilus assembly protein ComGB Machinery gene
  NST80_RS09785 (NST80_09785) comGA/cglA/cilD 2079763..2080704 (-) 942 WP_048674224.1 competence type IV pilus ATPase ComGA Machinery gene
  NST80_RS09790 (NST80_09790) - 2080785..2081147 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41606.74 Da        Isoelectric Point: 10.1478

>NTDB_id=986351 NST80_RS09780 WP_129852292.1 2078781..2079881(-) (comYB) [Streptococcus sp. FSL K6-1323]
MPVKISKAIRQPAGTSSWKAWLNKDISLKGISKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFAAVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLVLIMLGLKN
YLLPQLLEGDGKENWAVQLVQIFPQLFFVTLCGLLVLSLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAIVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=986351 NST80_RS09780 WP_129852292.1 2078781..2079881(-) (comYB) [Streptococcus sp. FSL K6-1323]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAGCAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAACTCAAGGTTATCCAGCTTTTCAAACAACTGTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACCTGTTGAAAGAATCGTCATTGTCTCTTATG
AAAGCGAGCTTAATGCGAGGCGATAGGTTGGACCAGATGTTTGCGGCAGTGGGCTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTATATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCAACCTATCCTATTCTACTTCTGGGTTTCCTAGTTCTGATTATGTTGGGGCTCAAAAAT
TATCTTCTGCCTCAACTGTTAGAGGGGGATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAACTCTT
TTTTGTGACTTTGTGCGGACTTCTTGTATTAAGCTTAATTCTCTATCTATGGGTCAAACGCCAGTCAGCCCTTGTCTTTT
ATCGACGAATGGCCAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATACGACTGCCTATTATGCTAGAGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCTCTAATGAAAGAGCAAAAATCAAAGCTTTTTCGTGAGCT
GGGGGCTGATTTAGAGGAAGCCTTGATGCTAGGACAGAGTTTTCCTGATCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTATCGTGATTGT
AATGATTTATGCAGCTATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.685

93.716

0.522
  comYB Streptococcus mutans UA159

55.685

93.716

0.522
  comYB Streptococcus gordonii str. Challis substr. CH1

51.603

93.716

0.484
  comGB/cglB Streptococcus mitis NCTC 12261

50.147

92.623

0.464
  comGB/cglB Streptococcus mitis SK321

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae Rx1

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae D39

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae R6

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae TIGR4

49.112

92.35

0.454
  comGB Lactococcus lactis subsp. cremoris KW2

44.377

89.891

0.399

Multiple sequence alignment