Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NST80_RS01845 Genome accession   NZ_CP152039
Coordinates   349363..349953 (+) Length   196 a.a.
NCBI ID   WP_045768756.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 344363..354953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS01835 (NST80_01835) - 345561..348470 (+) 2910 WP_049529423.1 glycoside hydrolase family 68 protein -
  NST80_RS01840 (NST80_01840) upp 348560..349189 (+) 630 WP_002883819.1 uracil phosphoribosyltransferase -
  NST80_RS01845 (NST80_01845) clpP 349363..349953 (+) 591 WP_045768756.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  NST80_RS01850 (NST80_01850) - 350039..350488 (+) 450 WP_049529424.1 YlbF family regulator -
  NST80_RS01855 (NST80_01855) - 350481..350762 (+) 282 WP_002890011.1 YlbG family protein -
  NST80_RS01860 (NST80_01860) - 350917..352092 (+) 1176 WP_048790259.1 ABC transporter substrate-binding protein -
  NST80_RS01865 (NST80_01865) - 352136..353020 (+) 885 WP_002883743.1 branched-chain amino acid ABC transporter permease -
  NST80_RS01870 (NST80_01870) - 353024..353974 (+) 951 WP_002883720.1 branched-chain amino acid ABC transporter permease -
  NST80_RS01875 (NST80_01875) - 353977..354741 (+) 765 WP_045771733.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21491.49 Da        Isoelectric Point: 4.4829

>NTDB_id=986301 NST80_RS01845 WP_045768756.1 349363..349953(+) (clpP) [Streptococcus sp. FSL K6-1323]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHADAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=986301 NST80_RS01845 WP_045768756.1 349363..349953(+) (clpP) [Streptococcus sp. FSL K6-1323]
ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTATGATATTTACTCACGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATTGCCCAACTCTTGTTTTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCTGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAGTTATCGCTTCCAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGCGGTACTGGTGGCGGTACGCAACAAA
CAGACATGGCTATCGCAGCTGAACACTTGCTCAAGACACGTAATAACTTGGAGCAAATCTTGGCAGATAATTCTGGACAA
CCAATTGAAAAAGTTCATGCAGACGCTGAACGTGACAATTGGATGAGTGCTCAAGAAACGCTTGAATATGGTTTCATCGA
TGAAATCATGGCTAATAACCAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

97.959

100

0.98
  clpP Streptococcus thermophilus LMD-9

97.959

100

0.98
  clpP Streptococcus pneumoniae Rx1

94.872

99.49

0.944
  clpP Streptococcus pneumoniae D39

94.872

99.49

0.944
  clpP Streptococcus pneumoniae R6

94.872

99.49

0.944
  clpP Streptococcus pneumoniae TIGR4

94.872

99.49

0.944
  clpP Streptococcus pyogenes JRS4

90.816

100

0.908
  clpP Streptococcus pyogenes MGAS315

90.816

100

0.908
  clpP Streptococcus mutans UA159

87.755

100

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.245

100

0.872
  clpP Lactococcus lactis subsp. cremoris KW2

86.735

100

0.867
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571

Multiple sequence alignment