Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   NST80_RS01515 Genome accession   NZ_CP152039
Coordinates   279326..280225 (+) Length   299 a.a.
NCBI ID   WP_070579027.1    Uniprot ID   A0AB37CNH0
Organism   Streptococcus sp. FSL K6-1323     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 274326..285225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS01495 (NST80_01495) trkA 275491..276840 (-) 1350 WP_118185134.1 Trk system potassium transporter TrkA -
  NST80_RS01500 (NST80_01500) - 277118..277627 (+) 510 WP_049529100.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  NST80_RS01505 (NST80_01505) - 277936..278493 (+) 558 WP_118185136.1 ECF transporter S component -
  NST80_RS01510 (NST80_01510) - 278496..279146 (+) 651 WP_045001950.1 phosphatase PAP2 family protein -
  NST80_RS01515 (NST80_01515) comR 279326..280225 (+) 900 WP_070579027.1 helix-turn-helix transcriptional regulator Regulator
  NST80_RS01520 (NST80_01520) comA 280400..282496 (+) 2097 WP_183138096.1 peptide cleavage/export ABC transporter Regulator
  NST80_RS01525 (NST80_01525) - 282607..282939 (+) 333 WP_118172049.1 DUF805 domain-containing protein -
  NST80_RS01530 (NST80_01530) - 282991..284085 (-) 1095 WP_259666646.1 DUF4173 domain-containing protein -
  NST80_RS01535 (NST80_01535) - 284473..284988 (+) 516 WP_002886548.1 AmiS/UreI family transporter -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35165.70 Da        Isoelectric Point: 5.8538

>NTDB_id=986297 NST80_RS01515 WP_070579027.1 279326..280225(+) (comR) [Streptococcus sp. FSL K6-1323]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKNMADLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=986297 NST80_RS01515 WP_070579027.1 279326..280225(+) (comR) [Streptococcus sp. FSL K6-1323]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGTCAGCAGATGTCACGTGAAGTACTATGTTT
AGATGGTGCGGAGTTGACTGTTCGCCAGTTAATTCGCATTGAAAAAGGGGAATCTCTCCCGTCTTTAGATAGACTATCTT
ACATCGCAAAACGTCTAGGAAAAAATATGGCCGATTTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTGCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAAAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

97.659

100

0.977
  comR Streptococcus salivarius SK126

96.99

100

0.97
  comR Streptococcus thermophilus LMG 18311

94.314

100

0.943
  comR Streptococcus thermophilus LMD-9

93.645

100

0.936
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

41.806

100

0.418

Multiple sequence alignment