Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NST80_RS01520 Genome accession   NZ_CP152039
Coordinates   280400..282496 (+) Length   698 a.a.
NCBI ID   WP_183138096.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 275400..287496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS01495 (NST80_01495) trkA 275491..276840 (-) 1350 WP_118185134.1 Trk system potassium transporter TrkA -
  NST80_RS01500 (NST80_01500) - 277118..277627 (+) 510 WP_049529100.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  NST80_RS01505 (NST80_01505) - 277936..278493 (+) 558 WP_118185136.1 ECF transporter S component -
  NST80_RS01510 (NST80_01510) - 278496..279146 (+) 651 WP_045001950.1 phosphatase PAP2 family protein -
  NST80_RS01515 (NST80_01515) comR 279326..280225 (+) 900 WP_070579027.1 helix-turn-helix transcriptional regulator Regulator
  NST80_RS01520 (NST80_01520) comA 280400..282496 (+) 2097 WP_183138096.1 peptide cleavage/export ABC transporter Regulator
  NST80_RS01525 (NST80_01525) - 282607..282939 (+) 333 WP_118172049.1 DUF805 domain-containing protein -
  NST80_RS01530 (NST80_01530) - 282991..284085 (-) 1095 WP_259666646.1 DUF4173 domain-containing protein -
  NST80_RS01535 (NST80_01535) - 284473..284988 (+) 516 WP_002886548.1 AmiS/UreI family transporter -
  NST80_RS01540 (NST80_01540) - 285013..285315 (+) 303 WP_002886558.1 urease subunit gamma -
  NST80_RS01545 (NST80_01545) - 285327..285638 (+) 312 WP_002886559.1 urease subunit beta -
  NST80_RS01550 (NST80_01550) ureC 285654..287372 (+) 1719 WP_002886560.1 urease subunit alpha -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78487.43 Da        Isoelectric Point: 9.0880

>NTDB_id=986298 NST80_RS01520 WP_183138096.1 280400..282496(+) (comA) [Streptococcus sp. FSL K6-1323]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVKAAKQLGLETQAIRADLDLFKQESLSY
PFIAHVVKEGGLQHYYTVFGQIKGKLVIGDPDPSKKVIKMPLEEFAKEWTGVALFFVPGETYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQSIIDRLIPQEAYTLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSIAVI
LPYIKHVFSLPISFFSSRRTGEITSRFGDANTIIDALASTILSIFLDVTIVMTLAVALILQNQSLFVMTLTVVPLYVLII
LAFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEERRYQEIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILWYGAQLVMEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKELSFKQLAL
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGKSGSGKTTLAKMLSGYYTKSSGHVTLDKDAIGHAELRQMVTYVPQQTYV
FTGTILENLLLGFEGEVDEKELLKVCQQADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSQQPILIFDEATS
GLDSDTESRVMANLTKIKRTMIFIAHRNSVRQHVSRVVTMVSGQIESDSPNFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=986298 NST80_RS01520 WP_183138096.1 280400..282496(+) (comA) [Streptococcus sp. FSL K6-1323]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGATTGTGGTGTCGCTGCCTTGGCCATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGGGAGTTGGCTCAGACTTCTCGTGAAGGCACTTCTGCGCTTGGTTTGGTTA
AAGCGGCCAAGCAGTTGGGCCTTGAAACTCAGGCTATTCGTGCGGATTTAGACTTGTTTAAACAAGAAAGCCTATCTTAT
CCTTTTATTGCACATGTGGTTAAAGAAGGTGGATTGCAACATTATTATACGGTGTTTGGTCAAATCAAGGGGAAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATGCCCTTAGAGGAGTTTGCCAAAGAGTGGACGGGAGTTGCTC
TCTTTTTTGTTCCAGGAGAAACTTACACTAAATACAAAGAAGATGTGCCTGGGCTTCTTTCATTTTTACCAATTTTGTTT
CGTCGTAAGGGTTTGATTGCAGTTATTGTCTTGTTAAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAATCTATTATTGACCGCTTGATTCCTCAGGAGGCCTACACTCTTCTAACCATGATTTCGCTAGGCCTATGTATCTCTT
ATCTAGCTCAACAAGTATTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGGAATTACTTGTCCATTGCTGTCATT
CTTCCTTATATTAAGCATGTCTTTTCCTTACCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATAACGTCACGTTT
TGGCGATGCTAACACTATTATCGATGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTC
TAGCTGTGGCTCTTATTTTACAAAATCAGTCACTTTTTGTGATGACTCTCACGGTAGTGCCTCTTTATGTTTTAATCATT
TTGGCCTTCTATAAGCTTTTTGAAAAGGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGCATTGAAACCTTAAAATCCTTGAGAGTTGAAGAGAGACGCTATCAGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCTTTGTCTAAGGCCAAGTGGCAATTAACGCAAGATGGTTTAAAGACAGGGGTTCAGTTAGTTTCC
AATGTCTTTATCCTCTGGTATGGGGCACAATTGGTCATGGAAGGGCAATTATCTGCAGGTCAGTTGATTACTTATAATAT
GTTGCTGAATTATTTTACAACTCCTTTAATTAATATTATCAATCTCCAATCCAAAATTCAGCAAGCCAAAGTAGCCAATA
ATCGTCTTCAAGAAGTTTATGTTGTGGATAAGGAAGAAAAAGGAAAACTTAAAGAGTTATCCTTTAAACAACTTGCTCTT
AAGGGTGTCAGTCACCGTTTTAGTTATCAGCAAGAGACGCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
TGCCCTCATGGGTAAAAGTGGATCTGGGAAAACGACCTTAGCGAAAATGTTGTCGGGTTATTACACAAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTGGCCATGCGGAGCTGCGGCAAATGGTGACTTACGTTCCCCAGCAGACCTATGTG
TTTACTGGAACCATTTTAGAAAATCTGCTGTTAGGATTTGAAGGAGAAGTTGACGAGAAAGAGCTTCTTAAGGTTTGCCA
ACAAGCTGATATCTTAGAGGATATTCAAAAAATGCCACTAGGTTTTCAGACCCAAGTATCTGAGGATGGTGGTCTATCTG
GTGGTCAAAAACAACGCTTGGCGATAGCGAGGGCCCTCTTGTCCCAGCAGCCTATCTTGATTTTTGACGAAGCTACCAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTCATGGCTAATCTTACTAAGATTAAACGAACAATGATTTTTATTGCTCACCG
CAATAGTGTCCGTCAACATGTCAGTCGTGTGGTGACCATGGTGAGTGGCCAGATTGAGTCGGACAGTCCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter transmembrane region (ABC_membrane)

(167-436)

ABC transporter (ABC_tran)

(494-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

54.269

98.997

0.537
  comA Streptococcus gordonii str. Challis substr. CH1

53.592

99.713

0.534
  comA Streptococcus mitis NCTC 12261

53.835

98.997

0.533
  comA Streptococcus pneumoniae Rx1

53.69

98.997

0.532
  comA Streptococcus pneumoniae D39

53.69

98.997

0.532
  comA Streptococcus pneumoniae R6

53.69

98.997

0.532
  comA Streptococcus pneumoniae TIGR4

53.546

98.997

0.53
  comA/nlmT Streptococcus mutans UA159

50.435

98.854

0.499

Multiple sequence alignment