Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHB39_RS05795 Genome accession   NZ_CP152031
Coordinates   1228871..1230130 (+) Length   419 a.a.
NCBI ID   WP_036080562.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-4013     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1223871..1235130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB39_RS05765 (MHB39_05765) - 1223946..1225247 (+) 1302 WP_342545989.1 pitrilysin family protein -
  MHB39_RS05770 (MHB39_05770) - 1225244..1225972 (+) 729 WP_342545990.1 SDR family oxidoreductase -
  MHB39_RS05775 (MHB39_05775) - 1226018..1226275 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  MHB39_RS05780 (MHB39_05780) - 1226491..1227276 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  MHB39_RS05785 (MHB39_05785) - 1227293..1228228 (+) 936 WP_176408485.1 helix-turn-helix domain-containing protein -
  MHB39_RS05790 (MHB39_05790) pgsA 1228276..1228854 (+) 579 WP_036080355.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHB39_RS05795 (MHB39_05795) cinA 1228871..1230130 (+) 1260 WP_036080562.1 competence/damage-inducible protein A Machinery gene
  MHB39_RS05800 (MHB39_05800) recA 1230292..1231356 (+) 1065 WP_016992835.1 recombinase RecA Machinery gene
  MHB39_RS05805 (MHB39_05805) rny 1231880..1233439 (+) 1560 WP_036080352.1 ribonuclease Y -
  MHB39_RS05810 (MHB39_05810) - 1233667..1234395 (+) 729 WP_258859535.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  MHB39_RS05815 (MHB39_05815) - 1234395..1235096 (+) 702 WP_312123983.1 CpsD/CapB family tyrosine-protein kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45276.73 Da        Isoelectric Point: 4.9066

>NTDB_id=985833 MHB39_RS05795 WP_036080562.1 1228871..1230130(+) (cinA) [Lysinibacillus sp. FSL K6-4013]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKSDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQNILDAQTNPTVAPLASDGEVTLRVTAKAATEQQARELIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNKLTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQE
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=985833 MHB39_RS05795 WP_036080562.1 1228871..1230130(+) (cinA) [Lysinibacillus sp. FSL K6-4013]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTGGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTGGGTCCAACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCAGGGAGTGAAGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAGTGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAAATATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCCGCAACAGAGCAGCAAGCTAGAGAGCTTATTAAGGCAAAGGTT
GCGGAAATACAAGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ATTGGATAATAAGCTAACAATCGCGGCTGCAGAAAGTTTAACTGCTGGGTTATTTCAATCTGAGCTTGCGGAAATTCCAG
GGGTAGGCAATGCTCTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGGCATTTCACAAGAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCGGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGCCTTACAGGAGAAGCAGGTCCCACTGCGCATGATCATCAGCCAGTAGGTACTGTTTGGATTGGTATTG
CCATAAATGATGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGGAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCACTATTTAATGCAGCTGTTAGAAGAACGTGGCTACACAAAACGTTATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.184

98.329

0.513
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus mitis SK321

44.909

91.408

0.411
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.125

91.408

0.403
  cinA Streptococcus mutans UA159

44.063

90.453

0.399

Multiple sequence alignment