Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHI34_RS01490 Genome accession   NZ_CP152028
Coordinates   299649..300908 (-) Length   419 a.a.
NCBI ID   WP_342504051.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL L8-0126     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 294649..305908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI34_RS01475 (MHI34_01475) - 295392..296174 (-) 783 WP_249646035.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  MHI34_RS01480 (MHI34_01480) rny 296306..297865 (-) 1560 WP_036121270.1 ribonuclease Y -
  MHI34_RS01485 (MHI34_01485) recA 298426..299490 (-) 1065 WP_036121272.1 recombinase RecA Machinery gene
  MHI34_RS01490 (MHI34_01490) cinA 299649..300908 (-) 1260 WP_342504051.1 competence/damage-inducible protein A Machinery gene
  MHI34_RS01495 (MHI34_01495) pgsA 300926..301504 (-) 579 WP_036121302.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI34_RS01500 (MHI34_01500) - 301552..302481 (-) 930 WP_170829781.1 RodZ domain-containing protein -
  MHI34_RS01505 (MHI34_01505) - 302498..303283 (-) 786 WP_008178931.1 DUF3388 domain-containing protein -
  MHI34_RS01510 (MHI34_01510) - 303501..303758 (-) 258 WP_004224939.1 DUF3243 domain-containing protein -
  MHI34_RS01515 (MHI34_01515) - 303802..304530 (-) 729 WP_036121304.1 SDR family oxidoreductase -
  MHI34_RS01520 (MHI34_01520) - 304527..305828 (-) 1302 WP_058843926.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45265.57 Da        Isoelectric Point: 4.7741

>NTDB_id=985667 MHI34_RS01490 WP_342504051.1 299649..300908(-) (cinA) [Lysinibacillus sp. FSL L8-0126]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNTKRLEQAIEVAETRADLIIFSGGLGPTKDDLTKET
IARHLGVSLESDDVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVRVQDILDAQTNPTVAPLASDGEVTLRVTAKAATEQEAQQLTATKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNQLTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKIKQLGISKE
LIDTHGVVSSECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=985667 MHI34_RS01490 WP_342504051.1 299649..300908(-) (cinA) [Lysinibacillus sp. FSL L8-0126]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
TCAATTATCCGAGCTTGGTATCAACGTTTTTTATCATACTGTAGTAGGCGATAATACGAAACGTTTAGAACAGGCTATTG
AAGTGGCGGAGACTCGTGCCGATTTAATTATTTTTTCGGGAGGACTTGGACCTACGAAAGATGATTTAACGAAGGAAACG
ATTGCTCGTCATCTTGGTGTTTCGCTTGAGTCTGATGATGTAGCATTAACGTATATTGAGCAATTTTTTGCCAAACGAGG
ACGTCCAATGACGGAGAATAATCGGAAACAGGCATTAATTTTAGCTGGCAGTGAAGTGCTAGCCAACCACCATGGAATGG
CGCCAGGTATGATTTTCACAAAAAATGACCGCACCTATATTTTACTTCCAGGACCACCAAAAGAGCTGGAACCTATGTTT
CAATTTGAAGCGAAACCAAAGCTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTGATGCGTTTCTATGG
GATTGGTGAAGCAGAGCTTGAAGTACGAGTTCAAGATATTCTAGATGCCCAAACAAATCCTACAGTTGCCCCACTTGCCT
CTGATGGAGAAGTAACATTACGTGTTACAGCTAAAGCGGCTACAGAGCAGGAAGCTCAACAGCTTACAGCTACAAAGGTT
GCTGAGATACAGGCACTTGTGGGAGATTATCAATATGGTGTAGATGACGACTCTCTTGCCTCTAAAACGGTAGAAATGCT
ACTTGATAATCAGTTAACCATTGCTGCCGCAGAAAGTTTAACAGCTGGGTTATTTCAATCTGAGCTTGCGGAAATTCCTG
GGGTAGGCAATGCACTGATTGGTGGCGTTGTTACCTATGCTGCTGATGCAAAGATAAAACAGCTTGGCATTTCAAAAGAA
TTAATTGATACACATGGTGTCGTTAGCAGTGAGTGTGCGGCGGCAATGGCAAGTGCTGTTCGCGAAAAGTTTGCTACTAA
TATTGGAATTGGTCTTACAGGAGAGGCTGGTCCGACAGCGCATGATCACCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CTATCAATGATGAGGAGCCACTTACTTATTTACTGCATTTATCAGGCATGCGAAATACAAATCGACTACGTGCGGTGAAA
TTTACATGTCATTATTTAATGCAGCTTTTAGAAGAACGCGGTTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.913

98.329

0.52
  cinA Streptococcus pneumoniae TIGR4

45.17

91.408

0.413
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

45.17

91.408

0.413
  cinA Streptococcus pneumoniae R6

45.17

91.408

0.413
  cinA Streptococcus pneumoniae D39

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399

Multiple sequence alignment