Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY15_RS00570 Genome accession   NZ_CP152018
Coordinates   121183..122436 (-) Length   417 a.a.
NCBI ID   WP_342538722.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL K6-1540     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 116183..127436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY15_RS00550 (MKY15_00550) - 116921..117193 (-) 273 WP_067211081.1 stage V sporulation protein S -
  MKY15_RS00555 (MKY15_00555) - 117280..118077 (-) 798 WP_342538721.1 TIGR00282 family metallophosphoesterase -
  MKY15_RS00560 (MKY15_00560) rny 118142..119701 (-) 1560 WP_067211083.1 ribonuclease Y -
  MKY15_RS00565 (MKY15_00565) recA 119948..121006 (-) 1059 WP_067211085.1 recombinase RecA Machinery gene
  MKY15_RS00570 (MKY15_00570) cinA 121183..122436 (-) 1254 WP_342538722.1 competence/damage-inducible protein A Machinery gene
  MKY15_RS00575 (MKY15_00575) pgsA 122451..123029 (-) 579 WP_067211090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY15_RS00580 (MKY15_00580) - 123080..123910 (-) 831 WP_067211093.1 helix-turn-helix domain-containing protein -
  MKY15_RS00585 (MKY15_00585) - 123963..124760 (-) 798 WP_067211096.1 DUF3388 domain-containing protein -
  MKY15_RS00590 (MKY15_00590) - 125046..125780 (-) 735 WP_342538723.1 SDR family oxidoreductase -
  MKY15_RS00595 (MKY15_00595) - 125777..127075 (-) 1299 WP_067214010.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45088.82 Da        Isoelectric Point: 4.9474

>NTDB_id=985141 MKY15_RS00570 WP_342538722.1 121183..122436(-) (cinA) [Sporosarcina sp. FSL K6-1540]
MKAEIIAIGSELLLGQITNTNAKFISLKLAEIGIDVHYQTVVGDNPDRLDEVIEIAMKRADILIFTGGLGPTKDDMTKET
IVKHIGTTLVSDDEALLYIQQYFERSGRVMTENNKKQALVFKGAKVLTNRKGMAPGMAVEKDEVRYILLPGPPHEMEPMF
TDEAIPYLLGVTGKQEVITSRVLKFYGIGEAELEHRIQSILEKQTNPTVAPLATADAVTLRLTAKAKTTDAALKLIAPIE
EEIRLLVGDYIYGTDDDTLASKAAELLIRNGWTIAAAESLTAGLFMAELAGEPGISSSLEGGIVVYNEKSKVEQLGIEQS
LLAEYGVVSAECAAALAENVKRTFKSDIGIGLTGAAGPDPHDGKPVGTVWIGIASTNAETETFKLLLSGSRNANRLRAAR
FALYYLIKHLTTKEGQS

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=985141 MKY15_RS00570 WP_342538722.1 121183..122436(-) (cinA) [Sporosarcina sp. FSL K6-1540]
ATGAAGGCAGAAATTATTGCAATTGGCTCAGAGTTATTACTTGGACAAATTACGAATACGAACGCTAAATTCATTTCGTT
AAAACTCGCAGAAATTGGTATCGATGTTCATTATCAGACGGTTGTGGGCGACAACCCGGATCGTTTGGATGAAGTGATTG
AAATTGCAATGAAACGTGCAGATATTCTAATCTTTACAGGCGGACTTGGACCGACGAAAGATGACATGACAAAAGAAACC
ATCGTGAAACATATCGGTACAACATTAGTCAGCGATGACGAGGCACTTCTTTATATTCAGCAATATTTCGAACGTAGCGG
TAGGGTTATGACGGAGAATAATAAGAAACAGGCACTAGTGTTTAAAGGCGCGAAAGTCTTAACAAACCGAAAAGGAATGG
CACCCGGAATGGCTGTTGAAAAGGATGAAGTACGCTATATCCTTCTCCCAGGTCCACCGCATGAAATGGAGCCGATGTTT
ACGGATGAGGCGATTCCTTATTTGTTAGGTGTTACTGGCAAACAGGAAGTTATCACATCGCGAGTTCTGAAGTTTTACGG
TATTGGGGAGGCGGAGCTTGAACACCGGATTCAATCTATTTTGGAAAAACAAACGAATCCGACAGTTGCTCCGCTGGCAA
CAGCTGACGCGGTCACATTGCGCCTCACTGCAAAAGCAAAAACGACCGATGCAGCGTTGAAGCTGATTGCGCCTATAGAA
GAGGAGATACGTTTACTAGTTGGAGACTACATCTACGGAACTGATGATGATACATTGGCATCCAAAGCTGCAGAACTTCT
CATTCGAAACGGTTGGACAATAGCTGCTGCGGAAAGTCTGACGGCAGGTCTATTTATGGCAGAACTGGCCGGTGAACCAG
GGATTAGTTCGTCACTAGAAGGTGGCATTGTCGTCTACAATGAGAAATCGAAAGTAGAACAACTTGGTATTGAGCAGTCC
CTACTTGCGGAGTATGGTGTCGTCAGTGCAGAATGCGCGGCTGCCCTTGCGGAAAACGTGAAACGAACGTTCAAATCGGA
TATTGGAATTGGTTTAACAGGTGCGGCTGGCCCAGATCCACATGATGGGAAGCCAGTCGGCACTGTGTGGATTGGTATCG
CTTCTACGAATGCAGAGACAGAGACATTTAAGTTGTTACTATCGGGTTCAAGAAACGCAAACCGTCTCAGAGCAGCAAGA
TTTGCGCTCTATTATCTGATTAAACACCTAACTACAAAAGAAGGCCAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50

98.801

0.494
  cinA Streptococcus pneumoniae TIGR4

44.604

100

0.446
  cinA Streptococcus pneumoniae Rx1

44.604

100

0.446
  cinA Streptococcus pneumoniae R6

44.604

100

0.446
  cinA Streptococcus pneumoniae D39

44.365

100

0.444
  cinA Streptococcus mitis NCTC 12261

44.125

100

0.441
  cinA Streptococcus mitis SK321

43.885

100

0.439
  cinA Streptococcus mutans UA159

41.889

99.041

0.415

Multiple sequence alignment