Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   MKY83_RS16535 Genome accession   NZ_CP152015
Coordinates   3191947..3192543 (+) Length   198 a.a.
NCBI ID   WP_003212962.1    Uniprot ID   A0A081LFM4
Organism   Bacillus sp. FSL M8-0266     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186947..3197543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY83_RS16515 (MKY83_16515) abc-f 3186986..3188545 (-) 1560 WP_342488695.1 ABC-F type ribosomal protection protein -
  MKY83_RS16520 (MKY83_16520) - 3189035..3190204 (-) 1170 WP_106029358.1 macrolide family glycosyltransferase -
  MKY83_RS16525 (MKY83_16525) - 3190373..3191263 (-) 891 WP_260564454.1 ABC transporter substrate-binding protein -
  MKY83_RS16535 (MKY83_16535) clpP 3191947..3192543 (+) 597 WP_003212962.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  MKY83_RS16540 (MKY83_16540) - 3192603..3193181 (-) 579 WP_044139006.1 TIGR00730 family Rossman fold protein -
  MKY83_RS16545 (MKY83_16545) - 3193318..3193647 (+) 330 WP_003213115.1 MazG-like family protein -
  MKY83_RS16550 (MKY83_16550) - 3193676..3195298 (-) 1623 WP_185107815.1 SulP family inorganic anion transporter -
  MKY83_RS16555 (MKY83_16555) - 3195336..3195917 (-) 582 WP_065097977.1 carbonic anhydrase -
  MKY83_RS16560 (MKY83_16560) - 3196469..3197446 (+) 978 WP_065097976.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21816.00 Da        Isoelectric Point: 4.6905

>NTDB_id=985050 MKY83_RS16535 WP_003212962.1 3191947..3192543(+) (clpP) [Bacillus sp. FSL M8-0266]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNAEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=985050 MKY83_RS16535 WP_003212962.1 3191947..3192543(+) (clpP) [Bacillus sp. FSL M8-0266]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATCGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATGCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LFM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53

Multiple sequence alignment