Detailed information NTG0098461

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8559_RS10055
• Genome accession: NZ_AP026926
• Coordinates: 1921271..1921675 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588007.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700119
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1916271..1926675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8559_RS10015 (PC0116_19550)	rnpA	1916692..1917063 (-)	372	WP_000739246.1	ribonuclease P protein component	-
R8559_RS10020	-	1917080..1917211 (-)	132	WP_000768903.1	hypothetical protein	-
R8559_RS10025 (PC0116_19560)	-	1917212..1918402 (-)	1191	WP_000167759.1	acetate kinase	-
R8559_RS10030 (PC0116_19570)	comYH	1918453..1919406 (-)	954	WP_000345123.1	class I SAM-dependent methyltransferase	Machinery gene
R8559_RS10035 (PC0116_19580)	-	1919467..1920054 (-)	588	WP_000679774.1	class I SAM-dependent methyltransferase	-
R8559_RS10040 (PC0116_19590)	comGG/cglG	1920191..1920604 (-)	414	WP_000265630.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8559_RS10045 (PC0116_19600)	comGF/cglF	1920582..1921043 (-)	462	WP_000250548.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8559_RS10050 (PC0116_19610)	comGE/cglE	1921006..1921308 (-)	303	WP_000413380.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8559_RS10055 (PC0116_19620)	comGD/cglD	1921271..1921675 (-)	405	WP_000588007.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8559_RS10060 (PC0116_19630)	comGC/cglC	1921668..1921934 (-)	267	WP_050123149.1	competence type IV pilus major pilin ComGC	Machinery gene
R8559_RS10065 (PC0116_19640)	-	1921936..1922193 (-)	258	WP_000698513.1	hypothetical protein	-
R8559_RS10070 (PC0116_19650)	-	1922463..1923419 (-)	957	WP_317639174.1	N-acetylmuramoyl-L-alanine amidase family protein	-
R8559_RS10075 (PC0116_19660)	-	1923422..1923757 (-)	336	WP_050200954.1	phage holin	-
R8559_RS10080 (PC0116_19670)	-	1923761..1924060 (-)	300	WP_001811580.1	hypothetical protein	-
R8559_RS10085 (PC0116_19680)	-	1924069..1924419 (-)	351	WP_221014204.1	hypothetical protein	-
R8559_RS10090 (PC0116_19690)	-	1924422..1924625 (-)	204	WP_001091118.1	hypothetical protein	-
R8559_RS10095	-	1924606..1924722 (-)	117	WP_001063633.1	hypothetical protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=98461 R8559_RS10055 WP_000588007.1 1921271..1921675(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700119]
MIKAFTMLESLLVLGFVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLPV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=98461 R8559_RS10055 WP_000588007.1 1921271..1921675(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700119]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTTTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGCCCCATCAGGTCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	98.507	100	0.985
comGD/cglD	Streptococcus pneumoniae Rx1	96.269	100	0.963
comGD/cglD	Streptococcus pneumoniae D39	96.269	100	0.963
comGD/cglD	Streptococcus pneumoniae R6	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.241	99.254	0.955
comGD/cglD	Streptococcus mitis SK321	95.522	100	0.955
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47