Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKX57_RS05535 Genome accession   NZ_CP152007
Coordinates   1191471..1192739 (+) Length   422 a.a.
NCBI ID   WP_342550831.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL M8-0216     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1186471..1197739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX57_RS05505 (MKX57_05505) - 1186541..1187839 (+) 1299 WP_089985365.1 pitrilysin family protein -
  MKX57_RS05510 (MKX57_05510) - 1187839..1188567 (+) 729 WP_089985366.1 SDR family oxidoreductase -
  MKX57_RS05515 (MKX57_05515) - 1188612..1188869 (+) 258 WP_008178933.1 DUF3243 domain-containing protein -
  MKX57_RS05520 (MKX57_05520) - 1189096..1189881 (+) 786 WP_342551112.1 DUF3388 domain-containing protein -
  MKX57_RS05525 (MKX57_05525) - 1189898..1190827 (+) 930 WP_008178929.1 helix-turn-helix domain-containing protein -
  MKX57_RS05530 (MKX57_05530) pgsA 1190875..1191453 (+) 579 WP_008178927.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKX57_RS05535 (MKX57_05535) cinA 1191471..1192739 (+) 1269 WP_342550831.1 competence/damage-inducible protein A Machinery gene
  MKX57_RS05540 (MKX57_05540) recA 1192891..1193952 (+) 1062 WP_008178923.1 recombinase RecA Machinery gene
  MKX57_RS05545 (MKX57_05545) rny 1194476..1196035 (+) 1560 WP_008178918.1 ribonuclease Y -
  MKX57_RS05550 (MKX57_05550) - 1196182..1196946 (+) 765 WP_008178916.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45673.94 Da        Isoelectric Point: 4.6178

>NTDB_id=984537 MKX57_RS05535 WP_342550831.1 1191471..1192739(+) (cinA) [Lysinibacillus sp. FSL M8-0216]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEILANYHGMAPGMIFKNNNRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAETEQQAQQLIAAKV
AEIQALVGDYQYGVDDDSLVSKTVEMLVDNNLTISAAESLTAGLFQSELAEIPGVGNALIGGVVTYAAEAKVKHLGISQE
LIDTHGVVSGECAAAMASAIRKQFGTNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQRLEERGYTNDINIE

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=984537 MKX57_RS05535 WP_342550831.1 1191471..1192739(+) (cinA) [Lysinibacillus sp. FSL M8-0216]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGCTATTATTAGGTCAAATTACGAATACGAATGCGAGATTTATCTCGAA
CCAGTTATCCGAGCTAGGCATTAATGTTTTTTACCATACAGTAGTTGGTGATAATGCAAAACGTTTAGAACAAGCTATTG
AAGTGGCAGAATCTCGTGCAGATTTAATTATATTTTCGGGAGGACTAGGACCTACGAAAGATGATTTAACAAAAGAAACA
ATTGCACGCCATCTCGGTGTTTCTCTAGAATTTGATGAAGTTGCATTAACATATATTGAGCAGTTTTTTGCCAAGCGAGG
ACGTCCTATGACGGAGAATAACCGGAAACAGGCTTTAATTCTAGCTGGAAGCGAAATATTAGCCAATTATCACGGAATGG
CACCTGGTATGATTTTTAAAAATAATAATCGTACGTATATTTTACTCCCAGGGCCACCAAAAGAGCTTGAGCCTATGTTT
CAATTTGAGGCGAAACCTAAGCTTGCTGCGATGCTTAATGATGGAGGGATCATTGCCTCTCATGTGATGCGTTTTTATGG
GATTGGTGAGGCCGAACTTGAAGTCCAGGTACAGGATATTTTAGATGCCCAAACAAATCCAACTGTCGCTCCACTTGCGT
CGGATGGTGAGGTAACATTACGCGTAACAGCTAAAGCAGAAACCGAACAGCAAGCCCAACAACTTATTGCCGCCAAAGTA
GCAGAGATACAAGCCCTTGTTGGTGACTATCAATATGGTGTGGATGATGACTCACTTGTTTCAAAGACAGTTGAAATGCT
AGTAGACAATAATCTAACTATTTCTGCTGCGGAAAGTTTAACGGCAGGGTTGTTTCAATCAGAGCTTGCGGAAATTCCAG
GGGTAGGGAACGCACTCATTGGTGGTGTAGTGACCTATGCGGCAGAAGCAAAAGTAAAGCATCTTGGTATTTCACAAGAA
TTAATAGATACACACGGCGTTGTGAGCGGTGAATGTGCTGCTGCAATGGCAAGTGCAATTCGAAAACAATTTGGGACAAA
TATCGGCATTGGGTTAACAGGAGAAGCAGGGCCTACAGCACATGACCATCAGCCAGTAGGAACGGTTTGGATTGGTATTG
CCATCAATGATGAGGAGCCACTTACATACTTACTTCATTTATCTGGTATGCGTAATACAAATCGACTCCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGCGTTTGGAAGAACGCGGCTATACAAACGATATTAATATAGAGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

97.63

0.505
  cinA Streptococcus mitis SK321

44.935

91.232

0.41
  cinA Streptococcus pneumoniae Rx1

44.648

90.758

0.405
  cinA Streptococcus pneumoniae TIGR4

44.648

90.758

0.405
  cinA Streptococcus pneumoniae R6

44.648

90.758

0.405
  cinA Streptococcus mitis NCTC 12261

44.156

91.232

0.403
  cinA Streptococcus pneumoniae D39

44.386

90.758

0.403
  cinA Streptococcus mutans UA159

44.327

89.81

0.398

Multiple sequence alignment