Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY80_RS05390 Genome accession   NZ_CP152004
Coordinates   1152798..1154057 (+) Length   419 a.a.
NCBI ID   WP_342532320.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL R5-0849     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1147798..1159057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY80_RS05360 (MKY80_05360) - 1147868..1149166 (+) 1299 WP_089985365.1 pitrilysin family protein -
  MKY80_RS05365 (MKY80_05365) - 1149166..1149894 (+) 729 WP_089985366.1 SDR family oxidoreductase -
  MKY80_RS05370 (MKY80_05370) - 1149939..1150196 (+) 258 WP_008178933.1 DUF3243 domain-containing protein -
  MKY80_RS05375 (MKY80_05375) - 1150423..1151208 (+) 786 WP_008178931.1 DUF3388 domain-containing protein -
  MKY80_RS05380 (MKY80_05380) - 1151225..1152154 (+) 930 WP_008178929.1 helix-turn-helix domain-containing protein -
  MKY80_RS05385 (MKY80_05385) pgsA 1152202..1152780 (+) 579 WP_008178927.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY80_RS05390 (MKY80_05390) cinA 1152798..1154057 (+) 1260 WP_342532320.1 competence/damage-inducible protein A Machinery gene
  MKY80_RS05395 (MKY80_05395) recA 1154219..1155280 (+) 1062 WP_008178923.1 recombinase RecA Machinery gene
  MKY80_RS05400 (MKY80_05400) rny 1155804..1157363 (+) 1560 WP_008178918.1 ribonuclease Y -
  MKY80_RS05405 (MKY80_05405) - 1157510..1158274 (+) 765 WP_090001338.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45480.79 Da        Isoelectric Point: 4.7703

>NTDB_id=984449 MKY80_RS05390 WP_342532320.1 1152798..1154057(+) (cinA) [Lysinibacillus sp. FSL R5-0849]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEILANYHGMAPGMIFKNNNRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAETEQQAQQLIAAKV
AEIQALVGDYQYGVDDDSLVSKTVEMLVDNNLTISAAESLTAGLFQSELAEIPGVGNALIGGVVTYAAEAKVKHLGISQE
LIDTHGVVSDECAAAMASAIRKQFGTNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQRLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=984449 MKY80_RS05390 WP_342532320.1 1152798..1154057(+) (cinA) [Lysinibacillus sp. FSL R5-0849]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGCTATTATTAGGTCAAATTACGAATACGAATGCGAGATTTATCTCGAA
CCAGTTATCCGAGCTAGGCATTAATGTTTTTTACCATACAGTAGTTGGTGATAATGCAAAACGTTTAGAACAAGCTATTG
AAGTGGCAGAATCTCGTGCAGATTTAATTATATTTTCGGGAGGACTAGGACCTACGAAAGATGATTTAACAAAAGAAACA
ATTGCACGCCATCTCGGTGTTTCTCTAGAATTTGATGAAGTTGCATTAACATATATTGAGCAGTTTTTTGCCAAGCGAGG
ACGTCCTATGACGGAGAATAACCGGAAACAGGCTTTAATTCTAGCTGGAAGCGAAATATTAGCCAATTATCACGGAATGG
CACCTGGTATGATTTTTAAAAATAATAATCGTACGTATATTTTACTCCCAGGGCCACCAAAAGAGCTTGAGCCTATGTTT
CAATTTGAGGCGAAACCTAAGCTTGCTGCGATGCTTAATGATGGAGGGATCATTGCCTCTCATGTGATGCGTTTTTATGG
GATTGGTGAGGCCGAACTTGAAGTCCAGGTACAGGATATTTTAGATGCCCAAACAAATCCAACTGTCGCTCCACTTGCGT
CGGATGGTGAGGTAACATTACGCGTAACAGCTAAAGCAGAAACCGAACAGCAAGCCCAACAACTTATTGCCGCCAAAGTA
GCAGAGATACAAGCCCTTGTTGGTGACTATCAATATGGTGTGGATGATGACTCACTTGTTTCAAAGACAGTTGAAATGCT
AGTAGACAATAATCTAACTATTTCTGCTGCGGAAAGTTTAACGGCAGGGTTGTTTCAATCAGAGCTTGCGGAAATTCCAG
GGGTAGGGAACGCACTCATTGGTGGTGTAGTGACCTATGCGGCAGAAGCAAAAGTAAAGCATCTTGGTATTTCACAAGAA
TTAATAGATACACACGGCGTTGTGAGCGATGAATGTGCTGCTGCAATGGCAAGTGCAATTCGAAAACAATTTGGGACAAA
TATCGGCATTGGGTTAACAGGAGAAGCAGGGCCTACAGCACATGACCATCAGCCAGTAGGAACGGTTTGGATTGGTATTG
CCATCAATGATGAGGAGCCACTTACATACTTACTTCATTTATCTGGTATGCGTAATACAAATCGACTCCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGCGTTTGGAAGAACGCGGCTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus mitis SK321

44.935

91.885

0.413
  cinA Streptococcus pneumoniae Rx1

44.648

91.408

0.408
  cinA Streptococcus pneumoniae TIGR4

44.648

91.408

0.408
  cinA Streptococcus pneumoniae R6

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.156

91.885

0.406
  cinA Streptococcus pneumoniae D39

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.327

90.453

0.401

Multiple sequence alignment