Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MKY11_RS17020 Genome accession   NZ_CP152000
Coordinates   3263790..3264257 (-) Length   155 a.a.
NCBI ID   WP_034647592.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1085     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258790..3269257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY11_RS16985 (MKY11_16985) fliW 3258926..3259360 (-) 435 WP_041091474.1 flagellar assembly protein FliW -
  MKY11_RS16990 (MKY11_16990) - 3259389..3259967 (-) 579 WP_024719238.1 DUF6470 family protein -
  MKY11_RS16995 (MKY11_16995) flgL 3260014..3260925 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  MKY11_RS17000 (MKY11_17000) flgK 3260934..3262454 (-) 1521 WP_058336981.1 flagellar hook-associated protein FlgK -
  MKY11_RS17005 (MKY11_17005) - 3262470..3262952 (-) 483 WP_007499977.1 flagellar protein FlgN -
  MKY11_RS17010 (MKY11_17010) flgM 3262971..3263234 (-) 264 WP_274660533.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKY11_RS17015 (MKY11_17015) - 3263314..3263733 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  MKY11_RS17020 (MKY11_17020) comFC 3263790..3264257 (-) 468 WP_034647592.1 ComF family protein Machinery gene
  MKY11_RS17025 (MKY11_17025) - 3264309..3264512 (-) 204 Protein_3298 hypothetical protein -
  MKY11_RS17030 (MKY11_17030) - 3264473..3264766 (-) 294 WP_008348267.1 competence protein ComFB -
  MKY11_RS17035 (MKY11_17035) comFA 3264831..3265958 (-) 1128 WP_274660532.1 DEAD/DEAH box helicase Machinery gene
  MKY11_RS17040 (MKY11_17040) - 3266330..3267172 (-) 843 WP_024719242.1 DegV family protein -
  MKY11_RS17045 (MKY11_17045) degU 3267384..3268073 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17734.77 Da        Isoelectric Point: 10.7974

>NTDB_id=984315 MKY11_RS17020 WP_034647592.1 3263790..3264257(-) (comFC) [Bacillus sp. FSL W7-1085]
MNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPIF
EPLIKVHQSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=984315 MKY11_RS17020 WP_034647592.1 3263790..3264257(-) (comFC) [Bacillus sp. FSL W7-1085]
ATGAATCGGTCTGTTTATGCTTACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTC
CTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTT
GAGCCACTTATAAAAGTACATCAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCA
ATTAAGGCAGTCAAACCCGATCGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(68-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.839

100

0.548
  comFC/cflB Streptococcus mitis SK321

41.176

98.71

0.406
  comFC/cflB Streptococcus mitis NCTC 12261

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae TIGR4

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae D39

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae Rx1

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae R6

39.869

98.71

0.394
  comFC Lactococcus lactis subsp. cremoris KW2

41.958

92.258

0.387

Multiple sequence alignment