Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NST70_RS17055 Genome accession   NZ_CP151971
Coordinates   3568168..3568668 (-) Length   166 a.a.
NCBI ID   WP_017554535.1    Uniprot ID   A0A150KHY2
Organism   Weizmannia sp. FSL K6-0777     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3563168..3573668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST70_RS17035 (NST70_17035) rplI 3564335..3564778 (-) 444 WP_014096625.1 50S ribosomal protein L9 -
  NST70_RS17040 (NST70_17040) - 3564775..3566748 (-) 1974 WP_035188759.1 DHH family phosphoesterase -
  NST70_RS17045 (NST70_17045) - 3566784..3567752 (-) 969 WP_342475471.1 YybS family protein -
  NST70_RS17050 (NST70_17050) rpsR 3567884..3568123 (-) 240 WP_013860883.1 30S ribosomal protein S18 -
  NST70_RS17055 (NST70_17055) ssbA 3568168..3568668 (-) 501 WP_017554535.1 single-stranded DNA-binding protein Machinery gene
  NST70_RS17060 (NST70_17060) rpsF 3568730..3569017 (-) 288 WP_013860885.1 30S ribosomal protein S6 -
  NST70_RS17065 (NST70_17065) ribE 3569276..3569746 (-) 471 WP_013860886.1 6,7-dimethyl-8-ribityllumazine synthase -
  NST70_RS17070 (NST70_17070) - 3569759..3570952 (-) 1194 WP_342475472.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  NST70_RS17075 (NST70_17075) - 3570970..3571617 (-) 648 WP_265114577.1 riboflavin synthase -
  NST70_RS17080 (NST70_17080) ribD 3571598..3572710 (-) 1113 WP_265114576.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18713.39 Da        Isoelectric Point: 4.6529

>NTDB_id=982726 NST70_RS17055 WP_017554535.1 3568168..3568668(-) (ssbA) [Weizmannia sp. FSL K6-0777]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVAESVQFLEPRSANQERSSSQNYGNNQGNAFPGYNQDQNQNQRNQSYSKPDEDPFSNDGQPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=982726 NST70_RS17055 WP_017554535.1 3568168..3568668(-) (ssbA) [Weizmannia sp. FSL K6-0777]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACCCTGGCTGTAAACCGTACGTTTACCAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAACAGGCTGAAAATGTGGCCAACTACTTGAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCCCAGGATGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGAAAGCGTCCAGTTTCTTGAACCGAGAAG
CGCGAATCAGGAACGCAGCAGCAGCCAGAATTACGGGAACAACCAAGGGAATGCTTTCCCGGGGTACAACCAGGATCAAA
ACCAGAATCAGCGCAATCAAAGTTATTCAAAGCCGGATGAAGATCCGTTCTCAAATGATGGACAACCAATTGACATCTCT
GATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150KHY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.455

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

63.855

0.416
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373
  ssb Neisseria meningitidis MC58

34.857

100

0.367
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.361
  ssb Vibrio cholerae strain A1552

33.333

100

0.361

Multiple sequence alignment