Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   MHI30_RS18475 Genome accession   NZ_CP151961
Coordinates   3605054..3605650 (+) Length   198 a.a.
NCBI ID   WP_003185550.1    Uniprot ID   A0A1J6GJE1
Organism   Bacillus sp. FSL L8-0528     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3600054..3610650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS18450 (MHI30_18450) - 3601046..3602491 (+) 1446 WP_075751464.1 glycoside hydrolase family 68 protein -
  MHI30_RS18455 (MHI30_18455) - 3602567..3604114 (+) 1548 WP_075751465.1 glycoside hydrolase family 32 protein -
  MHI30_RS18460 (MHI30_18460) - 3604180..3604332 (-) 153 WP_023856347.1 hypothetical protein -
  MHI30_RS18470 (MHI30_18470) - 3604629..3604856 (-) 228 WP_305954528.1 TM2 domain-containing protein -
  MHI30_RS18475 (MHI30_18475) clpP 3605054..3605650 (+) 597 WP_003185550.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  MHI30_RS18480 (MHI30_18480) - 3605724..3606299 (-) 576 WP_075751466.1 TIGR00730 family Rossman fold protein -
  MHI30_RS18485 (MHI30_18485) - 3606411..3606746 (+) 336 WP_075751467.1 MazG-like family protein -
  MHI30_RS18490 (MHI30_18490) - 3606733..3607710 (+) 978 WP_075751468.1 HD domain-containing protein -
  MHI30_RS18495 (MHI30_18495) - 3607758..3609377 (-) 1620 WP_075751469.1 solute carrier family 23 protein -
  MHI30_RS18500 (MHI30_18500) - 3609378..3609977 (-) 600 WP_075751470.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21803.99 Da        Isoelectric Point: 4.7982

>NTDB_id=982284 MHI30_RS18475 WP_003185550.1 3605054..3605650(+) (clpP) [Bacillus sp. FSL L8-0528]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=982284 MHI30_RS18475 WP_003185550.1 3605054..3605650(+) (clpP) [Bacillus sp. FSL L8-0528]
ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG
AAGATCCAGAAAAAGATATCAGCATCTATATTAACAGCCCTGGCGGCTCCATCACAGCCGGTATGGCGATTTATGACACC
ATGCAGTTCATTAAACCGCAAGTCTCTACGATTTGTACGGGAATGGCGGCATCTATGGGCGCGTTCCTTCTCGCAGCCGG
CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAGGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAGCGCATTCTTTCATTGCGTGACAAACTGAACAAAATTCTTGCAGAGCGCACTGGACAG
CCGCTTGAGGTTATCGAGCGCGATACAGACCGCGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA
TAAAGTGCTCACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.229

96.97

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535

Multiple sequence alignment