Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLM40_RS03980 | Genome accession | NZ_CP182859 |
| Coordinates | 879821..880345 (+) | Length | 174 a.a. |
| NCBI ID | WP_039195080.1 | Uniprot ID | A0A9X4G3K2 |
| Organism | Actinobacillus pleuropneumoniae strain APPFJLYC01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 874821..885345
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLM40_RS03970 (ACLM40_03970) | - | 876491..876703 (+) | 213 | WP_005597221.1 | hypothetical protein | - |
| ACLM40_RS03975 (ACLM40_03975) | uvrA | 876842..879670 (-) | 2829 | WP_005607713.1 | excinuclease ABC subunit UvrA | Machinery gene |
| ACLM40_RS03980 (ACLM40_03980) | ssb | 879821..880345 (+) | 525 | WP_039195080.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLM40_RS03985 (ACLM40_03985) | - | 880514..881332 (-) | 819 | WP_418146675.1 | GIY-YIG nuclease family protein | - |
| ACLM40_RS03990 (ACLM40_03990) | - | 881590..882318 (-) | 729 | WP_005597226.1 | hypothetical protein | - |
| ACLM40_RS03995 (ACLM40_03995) | - | 882329..883630 (-) | 1302 | WP_418146677.1 | ATP-binding protein | - |
| ACLM40_RS04000 (ACLM40_04000) | - | 883938..884825 (-) | 888 | WP_012262964.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 19229.01 Da Isoelectric Point: 4.9839
>NTDB_id=981324 ACLM40_RS03980 WP_039195080.1 879821..880345(+) (ssb) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPAQ
AEPPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPAQ
AEPPMDNFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=981324 ACLM40_RS03980 WP_039195080.1 879821..880345(+) (ssb) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTATAACCAAGGTAACAGCGGTTACGGCTACGATCAAACAGCAAGCCGCCCTGCTCAACAAGCAGCAAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATCCCGTTCTAA
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTATAACCAAGGTAACAGCGGTTACGGCTACGATCAAACAGCAAGCCGCCCTGCTCAACAAGCAGCAAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
78.022 |
100 |
0.816 |
| ssb | Vibrio cholerae strain A1552 |
58.757 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48 |
100 |
0.483 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
37.143 |
100 |
0.374 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.615 |
100 |
0.362 |