Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | R8586_RS03525 | Genome accession | NZ_AP026922 |
| Coordinates | 688234..688824 (+) | Length | 196 a.a. |
| NCBI ID | WP_000613477.1 | Uniprot ID | A0A064BX72 |
| Organism | Streptococcus pneumoniae strain PZ900700038 | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 686875..699070 | 688234..688824 | within | 0 |
Gene organization within MGE regions
Location: 686875..699070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8586_RS03515 (PC0038_06960) | - | 686875..687342 (+) | 468 | WP_000136976.1 | cytidine/deoxycytidylate deaminase family protein | - |
| R8586_RS03520 (PC0038_06970) | upp | 687431..688060 (+) | 630 | WP_000515973.1 | uracil phosphoribosyltransferase | - |
| R8586_RS03525 (PC0038_06980) | clpP | 688234..688824 (+) | 591 | WP_000613477.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| R8586_RS03530 (PC0038_06990) | - | 688903..689151 (+) | 249 | WP_000462126.1 | YlbG family protein | - |
| R8586_RS03535 (PC0038_07000) | - | 689252..690412 (+) | 1161 | WP_000726154.1 | ABC transporter substrate-binding protein | - |
| R8586_RS03540 (PC0038_07010) | - | 690680..691549 (+) | 870 | WP_000941421.1 | branched-chain amino acid ABC transporter permease | - |
| R8586_RS03545 (PC0038_07020) | - | 691553..692509 (+) | 957 | WP_000662292.1 | branched-chain amino acid ABC transporter permease | - |
| R8586_RS03550 (PC0038_07030) | - | 692509..693273 (+) | 765 | WP_001186003.1 | ABC transporter ATP-binding protein | - |
| R8586_RS03555 (PC0038_07040) | - | 693273..693983 (+) | 711 | WP_000062214.1 | ABC transporter ATP-binding protein | - |
| R8586_RS03560 (PC0038_07050) | - | 694448..695104 (+) | 657 | WP_000268663.1 | CBS domain-containing protein | - |
| R8586_RS03565 (PC0038_07060) | prfB | 695212..696307 (+) | 1096 | WP_010963246.1 | peptide chain release factor 2 | - |
| R8586_RS03570 (PC0038_07070) | ftsE | 696325..697017 (+) | 693 | WP_000022268.1 | cell division ATP-binding protein FtsE | - |
| R8586_RS03575 (PC0038_07080) | ftsX | 697010..697936 (+) | 927 | WP_000625536.1 | permease-like cell division protein FtsX | - |
| R8586_RS03580 (PC0038_07090) | - | 698117..699070 (-) | 954 | WP_001155321.1 | IS30-like element ISSpn8 family transposase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21358.36 Da Isoelectric Point: 4.4910
>NTDB_id=98097 R8586_RS03525 WP_000613477.1 688234..688824(+) (clpP) [Streptococcus pneumoniae strain PZ900700038]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=98097 R8586_RS03525 WP_000613477.1 688234..688824(+) (clpP) [Streptococcus pneumoniae strain PZ900700038]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAACTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGAACAGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAACTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGAACAGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| clpP | Streptococcus thermophilus LMG 18311 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus thermophilus LMD-9 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus pyogenes JRS4 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus pyogenes MGAS315 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus mutans UA159 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.128 |
99.49 |
0.847 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
84.615 |
99.49 |
0.842 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.031 |
98.469 |
0.571 |