Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AADZ70_RS12025 Genome accession   NZ_CP151679
Coordinates   2401189..2401785 (+) Length   198 a.a.
NCBI ID   WP_003151513.1    Uniprot ID   I2CAH7
Organism   Bacillus sp. YBsi01     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396189..2406785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS12010 (AADZ70_12010) - 2396903..2398372 (-) 1470 WP_342007097.1 glycoside hydrolase family 32 protein -
  AADZ70_RS12015 (AADZ70_12015) - 2398387..2399619 (-) 1233 WP_326351446.1 MFS transporter -
  AADZ70_RS12020 (AADZ70_12020) - 2399984..2400958 (+) 975 WP_342007098.1 LacI family DNA-binding transcriptional regulator -
  AADZ70_RS12025 (AADZ70_12025) clpP 2401189..2401785 (+) 597 WP_003151513.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AADZ70_RS12030 (AADZ70_12030) - 2401826..2402686 (-) 861 WP_342007099.1 LysR family transcriptional regulator -
  AADZ70_RS12035 (AADZ70_12035) - 2402860..2403990 (+) 1131 WP_342007100.1 PrpF domain-containing protein -
  AADZ70_RS12040 (AADZ70_12040) - 2404034..2405410 (+) 1377 WP_342007101.1 MFS transporter -
  AADZ70_RS12045 (AADZ70_12045) - 2405589..2405990 (+) 402 WP_235714286.1 hypothetical protein -
  AADZ70_RS12050 (AADZ70_12050) - 2405996..2406427 (+) 432 WP_235714285.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21831.06 Da        Isoelectric Point: 4.6982

>NTDB_id=979702 AADZ70_RS12025 WP_003151513.1 2401189..2401785(+) (clpP) [Bacillus sp. YBsi01]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=979702 AADZ70_RS12025 WP_003151513.1 2401189..2401785(+) (clpP) [Bacillus sp. YBsi01]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA
CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG
AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTACGATACA
ATGCAGTTCATTAAACCGAAAGTATCTACAATCTGCATCGGGATGGCCGCTTCTATGGGAGCATTTTTACTTGCAGCCGG
TGAGAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA
CAGAAATTGAAATCGCGGCAAAACGCATTCTCTTGCTTCGCGATAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG
CCGCTTGAAGTGATCGAGCGCGATACAGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA
TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2CAH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.96

100

0.96
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Streptococcus pneumoniae D39

57.216

97.98

0.561
  clpP Streptococcus pneumoniae Rx1

57.216

97.98

0.561
  clpP Streptococcus pneumoniae R6

57.216

97.98

0.561
  clpP Streptococcus pneumoniae TIGR4

57.216

97.98

0.561
  clpP Lactococcus lactis subsp. cremoris KW2

56.701

97.98

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

97.98

0.535
  clpP Streptococcus mutans UA159

54.639

97.98

0.535

Multiple sequence alignment