Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RBI96_RS21080 Genome accession   NZ_CP181075
Coordinates   4505797..4507290 (+) Length   497 a.a.
NCBI ID   WP_014604121.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4500797..4512290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI96_RS21050 (RBI96_021050) - 4500918..4501832 (-) 915 WP_003096438.1 fimbrial protein -
  RBI96_RS21055 (RBI96_021055) sutA 4502269..4502586 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  RBI96_RS21060 (RBI96_021060) - 4502664..4503089 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RBI96_RS21065 (RBI96_021065) - 4503350..4504678 (-) 1329 WP_003109815.1 ammonium transporter -
  RBI96_RS21070 (RBI96_021070) glnK 4504718..4505056 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  RBI96_RS21075 (RBI96_021075) - 4505496..4505756 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  RBI96_RS21080 (RBI96_021080) comM 4505797..4507290 (+) 1494 WP_014604121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RBI96_RS21085 (RBI96_021085) betT 4507415..4509383 (+) 1969 Protein_4165 choline BCCT transporter BetT -
  RBI96_RS21090 (RBI96_021090) pchP 4509426..4510475 (-) 1050 WP_003096497.1 phosphorylcholine phosphatase -
  RBI96_RS21095 (RBI96_021095) - 4510627..4511544 (-) 918 WP_014604122.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53113.05 Da        Isoelectric Point: 7.9587

>NTDB_id=976466 RBI96_RS21080 WP_014604121.1 4505797..4507290(+) (comM) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTTLDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=976466 RBI96_RS21080 WP_014604121.1 4505797..4507290(+) (comM) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCACCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.467

100

0.561
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.048

99.799

0.559
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Acinetobacter baylyi ADP1

53.414

100

0.535
  comM Legionella pneumophila str. Paris

49.901

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471
  comM Helicobacter pylori 26695

38.845

100

0.392