Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR11_RS05740 | Genome accession | NZ_CP151257 |
| Coordinates | 1158605..1159075 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934764.1 | Uniprot ID | A0A9P4DKA4 |
| Organism | Staphylococcus aureus strain BSN170 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1148757..1191965 | 1158605..1159075 | within | 0 |
Gene organization within MGE regions
Location: 1148757..1191965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR11_RS05665 (UXR11_05665) | - | 1148757..1150142 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| UXR11_RS05670 (UXR11_05670) | - | 1150349..1151029 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| UXR11_RS05675 (UXR11_05675) | - | 1151247..1151885 (-) | 639 | WP_000874710.1 | XRE family transcriptional regulator | - |
| UXR11_RS05680 (UXR11_05680) | - | 1152076..1152330 (+) | 255 | WP_001106628.1 | helix-turn-helix domain-containing protein | - |
| UXR11_RS05685 (UXR11_05685) | - | 1152346..1153134 (+) | 789 | WP_001148577.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR11_RS05690 (UXR11_05690) | - | 1153151..1153345 (+) | 195 | WP_001148857.1 | hypothetical protein | - |
| UXR11_RS05695 (UXR11_05695) | - | 1153527..1153757 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| UXR11_RS05700 (UXR11_05700) | - | 1153816..1153944 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| UXR11_RS05705 (UXR11_05705) | - | 1153937..1154098 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| UXR11_RS05710 (UXR11_05710) | - | 1154193..1154495 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| UXR11_RS05715 (UXR11_05715) | - | 1154500..1154760 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| UXR11_RS05720 (UXR11_05720) | - | 1154769..1155032 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXR11_RS05725 (UXR11_05725) | - | 1155041..1156984 (+) | 1944 | WP_153098890.1 | AAA family ATPase | - |
| UXR11_RS05730 (UXR11_05730) | - | 1156986..1157906 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| UXR11_RS05735 (UXR11_05735) | - | 1157987..1158604 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| UXR11_RS05740 (UXR11_05740) | ssbA | 1158605..1159075 (+) | 471 | WP_000934764.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR11_RS05745 (UXR11_05745) | - | 1159105..1159989 (+) | 885 | WP_000148317.1 | DnaD domain protein | - |
| UXR11_RS05750 (UXR11_05750) | - | 1159996..1160214 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXR11_RS05755 (UXR11_05755) | - | 1160223..1160627 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXR11_RS05760 (UXR11_05760) | - | 1160640..1161008 (+) | 369 | WP_001140280.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXR11_RS05765 (UXR11_05765) | - | 1161012..1161254 (+) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| UXR11_RS05770 (UXR11_05770) | - | 1161295..1161546 (+) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| UXR11_RS05775 (UXR11_05775) | - | 1161536..1161718 (+) | 183 | WP_000028425.1 | hypothetical protein | - |
| UXR11_RS05780 (UXR11_05780) | - | 1161711..1162247 (+) | 537 | WP_000185704.1 | dUTPase | - |
| UXR11_RS05785 (UXR11_05785) | - | 1162284..1162457 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| UXR11_RS05790 (UXR11_05790) | - | 1162474..1162680 (+) | 207 | WP_000195779.1 | DUF1381 domain-containing protein | - |
| UXR11_RS05795 (UXR11_05795) | - | 1162677..1163060 (+) | 384 | WP_000592229.1 | hypothetical protein | - |
| UXR11_RS05800 (UXR11_05800) | rinB | 1163060..1163233 (+) | 174 | WP_000595244.1 | transcriptional activator RinB | - |
| UXR11_RS05805 (UXR11_05805) | - | 1163234..1163380 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| UXR11_RS05810 (UXR11_05810) | - | 1163404..1163826 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| UXR11_RS05815 (UXR11_05815) | - | 1164013..1164453 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXR11_RS05820 (UXR11_05820) | - | 1164440..1165717 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| UXR11_RS05825 (UXR11_05825) | - | 1165728..1167266 (+) | 1539 | WP_031766723.1 | phage portal protein | - |
| UXR11_RS05830 (UXR11_05830) | - | 1167273..1168268 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| UXR11_RS05835 (UXR11_05835) | - | 1168341..1168511 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| UXR11_RS05840 (UXR11_05840) | - | 1168539..1168626 (+) | 88 | Protein_1136 | hypothetical protein | - |
| UXR11_RS05845 (UXR11_05845) | - | 1168620..1169240 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| UXR11_RS05850 (UXR11_05850) | - | 1169254..1170228 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| UXR11_RS05855 (UXR11_05855) | - | 1170250..1170537 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| UXR11_RS05860 (UXR11_05860) | - | 1170546..1170878 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| UXR11_RS05865 (UXR11_05865) | - | 1170875..1171177 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| UXR11_RS05870 (UXR11_05870) | - | 1171177..1171524 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXR11_RS05875 (UXR11_05875) | - | 1171536..1171919 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| UXR11_RS05880 (UXR11_05880) | - | 1171938..1172519 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| UXR11_RS05885 (UXR11_05885) | - | 1172581..1172946 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| UXR11_RS05890 (UXR11_05890) | - | 1172976..1173320 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXR11_RS05895 (UXR11_05895) | - | 1173337..1176801 (+) | 3465 | WP_031770185.1 | membrane protein | - |
| UXR11_RS05900 (UXR11_05900) | - | 1176814..1177761 (+) | 948 | WP_000350687.1 | phage tail family protein | - |
| UXR11_RS05905 (UXR11_05905) | - | 1177770..1179671 (+) | 1902 | WP_000156416.1 | SGNH/GDSL hydrolase family protein | - |
| UXR11_RS05910 (UXR11_05910) | - | 1179686..1181596 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| UXR11_RS05915 (UXR11_05915) | - | 1181596..1183419 (+) | 1824 | WP_000259596.1 | phage baseplate upper protein | - |
| UXR11_RS05920 (UXR11_05920) | - | 1183419..1183796 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| UXR11_RS05925 (UXR11_05925) | - | 1183800..1183973 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| UXR11_RS05930 (UXR11_05930) | - | 1184013..1184312 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| UXR11_RS05935 (UXR11_05935) | - | 1184449..1186347 (+) | 1899 | WP_000524022.1 | glucosaminidase domain-containing protein | - |
| UXR11_RS05940 (UXR11_05940) | - | 1186360..1187598 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| UXR11_RS05945 (UXR11_05945) | - | 1187604..1187999 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| UXR11_RS05950 (UXR11_05950) | - | 1188055..1188492 (+) | 438 | WP_000354121.1 | phage holin | - |
| UXR11_RS05955 (UXR11_05955) | - | 1188473..1189918 (+) | 1446 | WP_001148125.1 | SH3 domain-containing protein | - |
| UXR11_RS05960 (UXR11_05960) | - | 1190427..1191221 (+) | 795 | WP_000238963.1 | HipA family kinase | - |
| UXR11_RS05965 (UXR11_05965) | - | 1191228..1191965 (+) | 738 | WP_000278830.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=975997 UXR11_RS05740 WP_000934764.1 1158605..1159075(+) (ssbA) [Staphylococcus aureus strain BSN170]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=975997 UXR11_RS05740 WP_000934764.1 1158605..1159075(+) (ssbA) [Staphylococcus aureus strain BSN170]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |