Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   R8775_RS09705 Genome accession   NZ_AP026915
Coordinates   1851787..1852200 (-) Length   137 a.a.
NCBI ID   WP_000265620.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1846787..1857200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS09675 (PC0005_18780) - 1847482..1848306 (-) 825 WP_201417385.1 membrane protein insertase YidC -
  R8775_RS09680 (PC0005_18790) rnpA 1848281..1848652 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8775_RS09685 - 1848669..1848800 (-) 132 WP_000768904.1 hypothetical protein -
  R8775_RS09690 (PC0005_18800) - 1848801..1849991 (-) 1191 WP_050233485.1 acetate kinase -
  R8775_RS09695 (PC0005_18810) comYH 1850042..1850995 (-) 954 WP_050233486.1 class I SAM-dependent methyltransferase Machinery gene
  R8775_RS09700 - 1851056..1851650 (-) 595 Protein_1889 class I SAM-dependent methyltransferase -
  R8775_RS09705 (PC0005_18840) comGG/cglG 1851787..1852200 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8775_RS09710 comGF/cglF 1852178..1852639 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8775_RS09715 (PC0005_18860) comGE/cglE 1852602..1852904 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8775_RS09720 (PC0005_18870) comGD/cglD 1852867..1853271 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8775_RS09725 (PC0005_18880) comGC/cglC 1853264..1853590 (-) 327 WP_000738630.1 comG operon protein ComGC Machinery gene
  R8775_RS09730 (PC0005_18890) comGB/cglB 1853592..1854608 (-) 1017 WP_078134945.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8775_RS09735 (PC0005_18900) comGA/cglA/cilD 1854556..1855497 (-) 942 WP_000249569.1 competence type IV pilus ATPase ComGA Machinery gene
  R8775_RS09740 (PC0005_18910) - 1855573..1855938 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8775_RS09745 (PC0005_18920) - 1856089..1857147 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15888.33 Da        Isoelectric Point: 10.2476

>NTDB_id=97595 R8775_RS09705 WP_000265620.1 1851787..1852200(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900700005]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEIATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=97595 R8775_RS09705 WP_000265620.1 1851787..1852200(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900700005]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCAATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGATAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comGG/cglG Streptococcus mitis SK321

85.95

88.321

0.759


Multiple sequence alignment