Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AAC899_RS15215 Genome accession   NZ_CP151168
Coordinates   3231144..3232295 (+) Length   383 a.a.
NCBI ID   WP_311090847.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3226144..3237295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS15190 (AAC899_15190) - 3226318..3226623 (-) 306 WP_004941498.1 hypothetical protein -
  AAC899_RS15195 (AAC899_15195) - 3226699..3228720 (-) 2022 WP_317657715.1 TonB-dependent copper receptor -
  AAC899_RS15200 (AAC899_15200) - 3228823..3229254 (-) 432 WP_076033608.1 DUF2946 family protein -
  AAC899_RS15205 (AAC899_15205) def 3229336..3229860 (-) 525 WP_004944209.1 peptide deformylase -
  AAC899_RS15210 (AAC899_15210) tsaP 3229980..3231122 (+) 1143 WP_317657714.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AAC899_RS15215 (AAC899_15215) dprA 3231144..3232295 (+) 1152 WP_311090847.1 DNA-processing protein DprA Machinery gene
  AAC899_RS15220 (AAC899_15220) - 3232335..3232907 (+) 573 WP_004941519.1 Sua5/YciO/YrdC/YwlC family protein -
  AAC899_RS15225 (AAC899_15225) - 3233410..3234318 (-) 909 WP_048763958.1 outer envelope protein -
  AAC899_RS15230 (AAC899_15230) - 3234627..3235568 (-) 942 WP_004941523.1 LysR substrate-binding domain-containing protein -
  AAC899_RS15235 (AAC899_15235) - 3235806..3236720 (-) 915 WP_004941526.1 DMT family transporter -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41827.42 Da        Isoelectric Point: 6.6827

>NTDB_id=975600 AAC899_RS15215 WP_311090847.1 3231144..3232295(+) (dprA) [Acinetobacter soli strain HY24]
MMKQFSAHHRHTIAVWSLVQHSLSSFDTLVRHFGDCETALEPQNLAKWQQLKLHANHLKRAAEYATPAGQSAFSNLLAHI
QQHTDFIVTPEDPLYPAQLMPYTGKPPILFGRGSAQPLLQPQIAVVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLAHG
IDEAAHQGSVMQQRAIAVVGTGLDRCYPAGNRTLYESIASQGGAVVSEFLPGTPPLKANFPRRNRIVSGLSLGVLVVEAK
KESGSLITANRAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQILEDLALPTHWHAQSTAAVSATSTPEDVSG
ALAVPEELIPLYQRLDWTGQDLDQLAQQFEGSTAELTGQLMELELLGLCIQQSGRYLRCTGGF

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=975600 AAC899_RS15215 WP_311090847.1 3231144..3232295(+) (dprA) [Acinetobacter soli strain HY24]
ATGATGAAACAATTTTCTGCGCACCATCGCCATACCATTGCAGTATGGTCATTGGTGCAACACTCACTCTCAAGTTTTGA
TACCTTAGTTCGTCATTTTGGCGATTGTGAAACGGCGCTTGAACCTCAGAATCTGGCCAAGTGGCAACAGTTAAAGCTAC
ATGCCAATCATCTAAAGCGAGCTGCGGAATACGCAACACCAGCGGGGCAATCGGCATTTTCAAACTTGCTTGCGCACATT
CAGCAACACACTGATTTTATTGTTACGCCAGAAGATCCACTATATCCTGCCCAGTTGATGCCCTATACCGGCAAGCCCCC
AATTTTATTTGGTCGTGGTTCGGCTCAGCCCTTATTACAGCCACAAATTGCCGTGGTGGGCAGCCGTAAACCCAGCCCAC
ATGGTCGGCAAGTGGCCTATGACTTTGCCTATTACCTCAGTGAAAAAGGATTTTATATCACCAGTGGGCTTGCACACGGC
ATTGATGAAGCAGCCCATCAAGGCAGTGTCATGCAGCAACGGGCGATTGCAGTGGTCGGAACTGGATTGGATCGATGTTA
TCCGGCAGGGAATCGTACATTATACGAGAGTATTGCTTCGCAAGGCGGTGCAGTCGTCAGCGAGTTTTTGCCGGGCACAC
CACCGTTAAAGGCCAATTTTCCACGGCGCAACCGTATTGTGAGTGGTTTAAGCTTAGGCGTGTTGGTGGTGGAAGCCAAA
AAAGAAAGTGGCTCACTGATTACCGCGAATAGAGCTGCTGAGCAAGGTAAAACGGTCTTCGCGATTCCGGGACATATTTA
TAGTGAGTTTCATCAAGGCTGCCATCAATTGATTCGAGAAGGAGCAATTTTGGTGGATCATCCGGAGCAAATTCTGGAAG
ATTTAGCGCTTCCCACACATTGGCATGCTCAATCTACGGCAGCAGTCTCGGCCACCTCTACCCCTGAAGATGTATCCGGT
GCCTTGGCTGTTCCCGAAGAGCTGATTCCGCTTTATCAGCGCTTAGACTGGACGGGACAAGACCTCGATCAGTTGGCACA
GCAGTTTGAAGGCTCGACCGCAGAGCTGACTGGTCAACTCATGGAACTTGAACTGTTGGGACTGTGCATTCAGCAGTCGG
GACGTTATCTGCGTTGTACTGGTGGGTTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baylyi ADP1

74.142

98.956

0.734

  dprA Acinetobacter baumannii strain A118

67.454

99.478

0.671

  dprA Acinetobacter baumannii D1279779

67.454

99.478

0.671

  dprA Neisseria gonorrhoeae MS11

38.235

97.65

0.373

  dprA Neisseria gonorrhoeae strain FA1090

37.766

98.172

0.371

  dprA Haemophilus influenzae Rd KW20

42.683

85.64

0.366


Multiple sequence alignment