Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AADH43_RS03115 | Genome accession | NZ_CP151155 |
| Coordinates | 633378..633806 (-) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio parahaemolyticus strain vp-pir-201806 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 628378..638806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADH43_RS03095 (AADH43_03095) | coaE | 628896..629510 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| AADH43_RS03100 (AADH43_03100) | pilD | 629511..630380 (-) | 870 | WP_031855539.1 | A24 family peptidase | Machinery gene |
| AADH43_RS03105 (AADH43_03105) | pilC | 630445..631668 (-) | 1224 | WP_023585959.1 | type II secretion system F family protein | Machinery gene |
| AADH43_RS03110 (AADH43_03110) | pilB | 631693..633378 (-) | 1686 | WP_031855538.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AADH43_RS03115 (AADH43_03115) | pilA | 633378..633806 (-) | 429 | WP_009698754.1 | pilin | Machinery gene |
| AADH43_RS03120 (AADH43_03120) | nadC | 634071..634958 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AADH43_RS03125 (AADH43_03125) | ampD | 635051..635602 (+) | 552 | WP_025637088.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AADH43_RS03130 (AADH43_03130) | pdhR | 636008..636775 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=975484 AADH43_RS03115 WP_009698754.1 633378..633806(-) (pilA) [Vibrio parahaemolyticus strain vp-pir-201806]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=975484 AADH43_RS03115 WP_009698754.1 633378..633806(-) (pilA) [Vibrio parahaemolyticus strain vp-pir-201806]
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |