Detailed information NTG0975481

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AADH43_RS03100
• Genome accession: NZ_CP151155
• Coordinates: 629511..630380 (-)
• Length: 289 a.a.
• NCBI ID: WP_031855539.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain vp-pir-201806
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 624511..635380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADH43_RS03065 (AADH43_03065)	rpsP	625495..625743 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AADH43_RS03070 (AADH43_03070)	rimM	625772..626320 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
AADH43_RS03075 (AADH43_03075)	trmD	626348..627091 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AADH43_RS03080 (AADH43_03080)	rplS	627133..627486 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
AADH43_RS03085 (AADH43_03085)	yacG	627865..628059 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
AADH43_RS03090 (AADH43_03090)	zapD	628128..628868 (-)	741	WP_023624252.1	cell division protein ZapD	-
AADH43_RS03095 (AADH43_03095)	coaE	628896..629510 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
AADH43_RS03100 (AADH43_03100)	pilD	629511..630380 (-)	870	WP_031855539.1	A24 family peptidase	Machinery gene
AADH43_RS03105 (AADH43_03105)	pilC	630445..631668 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
AADH43_RS03110 (AADH43_03110)	pilB	631693..633378 (-)	1686	WP_031855538.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AADH43_RS03115 (AADH43_03115)	pilA	633378..633806 (-)	429	WP_009698754.1	pilin	Machinery gene
AADH43_RS03120 (AADH43_03120)	nadC	634071..634958 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1972

>NTDB_id=975481 AADH43_RS03100 WP_031855539.1 629511..630380(-) (pilD) [Vibrio parahaemolyticus strain vp-pir-201806]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQEAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=975481 AADH43_RS03100 WP_031855539.1 629511..630380(-) (pilD) [Vibrio parahaemolyticus strain vp-pir-201806]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGAAGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGGTGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45