Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR56_RS05715 | Genome accession | NZ_CP151129 |
| Coordinates | 1153203..1153673 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934764.1 | Uniprot ID | A0A9P4DKA4 |
| Organism | Staphylococcus aureus strain BSN157 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1143355..1186562 | 1153203..1153673 | within | 0 |
Gene organization within MGE regions
Location: 1143355..1186562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR56_RS05640 (UXR56_05640) | - | 1143355..1144740 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| UXR56_RS05645 (UXR56_05645) | - | 1144947..1145627 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| UXR56_RS05650 (UXR56_05650) | - | 1145845..1146483 (-) | 639 | WP_000874710.1 | XRE family transcriptional regulator | - |
| UXR56_RS05655 (UXR56_05655) | - | 1146674..1146928 (+) | 255 | WP_001106628.1 | helix-turn-helix domain-containing protein | - |
| UXR56_RS05660 (UXR56_05660) | - | 1146944..1147732 (+) | 789 | WP_001148577.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR56_RS05665 (UXR56_05665) | - | 1147749..1147943 (+) | 195 | WP_001148857.1 | hypothetical protein | - |
| UXR56_RS05670 (UXR56_05670) | - | 1148125..1148355 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| UXR56_RS05675 (UXR56_05675) | - | 1148414..1148542 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| UXR56_RS05680 (UXR56_05680) | - | 1148535..1148696 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| UXR56_RS05685 (UXR56_05685) | - | 1148791..1149093 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| UXR56_RS05690 (UXR56_05690) | - | 1149098..1149358 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| UXR56_RS05695 (UXR56_05695) | - | 1149367..1149630 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXR56_RS05700 (UXR56_05700) | - | 1149639..1151582 (+) | 1944 | WP_153098890.1 | AAA family ATPase | - |
| UXR56_RS05705 (UXR56_05705) | - | 1151584..1152504 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| UXR56_RS05710 (UXR56_05710) | - | 1152585..1153202 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| UXR56_RS05715 (UXR56_05715) | ssbA | 1153203..1153673 (+) | 471 | WP_000934764.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR56_RS05720 (UXR56_05720) | - | 1153703..1154587 (+) | 885 | WP_000148317.1 | DnaD domain protein | - |
| UXR56_RS05725 (UXR56_05725) | - | 1154594..1154812 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXR56_RS05730 (UXR56_05730) | - | 1154821..1155225 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXR56_RS05735 (UXR56_05735) | - | 1155238..1155606 (+) | 369 | WP_001140280.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXR56_RS05740 (UXR56_05740) | - | 1155610..1155852 (+) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| UXR56_RS05745 (UXR56_05745) | - | 1155893..1156144 (+) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| UXR56_RS05750 (UXR56_05750) | - | 1156134..1156316 (+) | 183 | WP_000028425.1 | hypothetical protein | - |
| UXR56_RS05755 (UXR56_05755) | - | 1156309..1156845 (+) | 537 | WP_000185704.1 | dUTPase | - |
| UXR56_RS05760 (UXR56_05760) | - | 1156882..1157055 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| UXR56_RS05765 (UXR56_05765) | - | 1157072..1157278 (+) | 207 | WP_000195779.1 | DUF1381 domain-containing protein | - |
| UXR56_RS05770 (UXR56_05770) | - | 1157275..1157658 (+) | 384 | WP_000592229.1 | hypothetical protein | - |
| UXR56_RS05775 (UXR56_05775) | rinB | 1157658..1157831 (+) | 174 | WP_000595244.1 | transcriptional activator RinB | - |
| UXR56_RS05780 (UXR56_05780) | - | 1157832..1157978 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| UXR56_RS05785 (UXR56_05785) | - | 1158002..1158424 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| UXR56_RS05790 (UXR56_05790) | - | 1158611..1159051 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXR56_RS05795 (UXR56_05795) | - | 1159038..1160315 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| UXR56_RS05800 (UXR56_05800) | - | 1160326..1161864 (+) | 1539 | WP_031766723.1 | phage portal protein | - |
| UXR56_RS05805 (UXR56_05805) | - | 1161871..1162866 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| UXR56_RS05810 (UXR56_05810) | - | 1162939..1163109 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| UXR56_RS05815 (UXR56_05815) | - | 1163137..1163224 (+) | 88 | Protein_1131 | hypothetical protein | - |
| UXR56_RS05820 (UXR56_05820) | - | 1163218..1163838 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| UXR56_RS05825 (UXR56_05825) | - | 1163852..1164826 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| UXR56_RS05830 (UXR56_05830) | - | 1164848..1165135 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| UXR56_RS05835 (UXR56_05835) | - | 1165144..1165476 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| UXR56_RS05840 (UXR56_05840) | - | 1165473..1165775 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| UXR56_RS05845 (UXR56_05845) | - | 1165775..1166122 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXR56_RS05850 (UXR56_05850) | - | 1166134..1166517 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| UXR56_RS05855 (UXR56_05855) | - | 1166536..1167117 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| UXR56_RS05860 (UXR56_05860) | - | 1167179..1167544 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| UXR56_RS05865 (UXR56_05865) | - | 1167574..1167918 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXR56_RS05870 (UXR56_05870) | - | 1167935..1171399 (+) | 3465 | WP_031770185.1 | membrane protein | - |
| UXR56_RS05875 (UXR56_05875) | - | 1171412..1172359 (+) | 948 | WP_000350687.1 | phage tail family protein | - |
| UXR56_RS05880 (UXR56_05880) | - | 1172368..1174269 (+) | 1902 | WP_000156416.1 | SGNH/GDSL hydrolase family protein | - |
| UXR56_RS05885 (UXR56_05885) | - | 1174284..1176194 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| UXR56_RS05890 (UXR56_05890) | - | 1176194..1178016 (+) | 1823 | Protein_1146 | phage baseplate upper protein | - |
| UXR56_RS05895 (UXR56_05895) | - | 1178016..1178393 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| UXR56_RS05900 (UXR56_05900) | - | 1178397..1178570 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| UXR56_RS05905 (UXR56_05905) | - | 1178610..1178909 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| UXR56_RS05910 (UXR56_05910) | - | 1179046..1180944 (+) | 1899 | WP_000524022.1 | glucosaminidase domain-containing protein | - |
| UXR56_RS05915 (UXR56_05915) | - | 1180957..1182195 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| UXR56_RS05920 (UXR56_05920) | - | 1182201..1182596 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| UXR56_RS05925 (UXR56_05925) | - | 1182652..1183089 (+) | 438 | WP_000354121.1 | phage holin | - |
| UXR56_RS05930 (UXR56_05930) | - | 1183070..1184515 (+) | 1446 | WP_001148125.1 | SH3 domain-containing protein | - |
| UXR56_RS05935 (UXR56_05935) | - | 1185024..1185818 (+) | 795 | WP_000238963.1 | HipA family kinase | - |
| UXR56_RS05940 (UXR56_05940) | - | 1185825..1186562 (+) | 738 | WP_000278830.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=975218 UXR56_RS05715 WP_000934764.1 1153203..1153673(+) (ssbA) [Staphylococcus aureus strain BSN157]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=975218 UXR56_RS05715 WP_000934764.1 1153203..1153673(+) (ssbA) [Staphylococcus aureus strain BSN157]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |