Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AABL52_RS13465 Genome accession   NZ_CP151108
Coordinates   2602776..2603357 (+) Length   193 a.a.
NCBI ID   WP_341519649.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2591299..2605637 2602776..2603357 within 0


Gene organization within MGE regions


Location: 2591299..2605637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS13390 (AABL52_13390) - 2591299..2592105 (+) 807 WP_000540639.1 GH25 family lysozyme -
  AABL52_RS13395 (AABL52_13395) - 2592169..2592381 (-) 213 WP_000820163.1 DUF3006 domain-containing protein -
  AABL52_RS13400 (AABL52_13400) - 2592384..2593769 (-) 1386 WP_341519639.1 S-layer homology domain-containing protein -
  AABL52_RS13405 (AABL52_13405) - 2594071..2594475 (+) 405 WP_341519640.1 GNAT family N-acetyltransferase -
  AABL52_RS13410 (AABL52_13410) - 2594491..2594844 (+) 354 WP_341519641.1 MmcQ/YjbR family DNA-binding protein -
  AABL52_RS13415 (AABL52_13415) - 2594866..2595573 (+) 708 WP_341519642.1 class I SAM-dependent methyltransferase -
  AABL52_RS13420 (AABL52_13420) - 2595639..2596025 (+) 387 WP_000851055.1 DUF2809 domain-containing protein -
  AABL52_RS13425 (AABL52_13425) - 2596047..2596565 (+) 519 WP_341519643.1 DNA topology modulation protein -
  AABL52_RS13430 (AABL52_13430) - 2596598..2597275 (+) 678 WP_341519644.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  AABL52_RS13435 (AABL52_13435) - 2597345..2598538 (+) 1194 WP_341519645.1 macrolide family glycosyltransferase -
  AABL52_RS13440 (AABL52_13440) - 2598911..2600278 (+) 1368 WP_341519646.1 lytic polysaccharide monooxygenase -
  AABL52_RS13445 (AABL52_13445) - 2600396..2600830 (-) 435 WP_341519647.1 GNAT family N-acetyltransferase -
  AABL52_RS13450 (AABL52_13450) rpiA 2600934..2601602 (-) 669 WP_341519648.1 ribose 5-phosphate isomerase A -
  AABL52_RS13455 (AABL52_13455) - 2601604..2601924 (-) 321 WP_340420174.1 2Fe-2S iron-sulfur cluster-binding protein -
  AABL52_RS13460 (AABL52_13460) - 2602068..2602754 (+) 687 WP_097844792.1 RNA polymerase subunit sigma-70 -
  AABL52_RS13465 (AABL52_13465) clpP 2602776..2603357 (+) 582 WP_341519649.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AABL52_RS13470 (AABL52_13470) - 2603403..2604260 (-) 858 WP_341519650.1 glycine betaine ABC transporter substrate-binding protein -
  AABL52_RS13475 (AABL52_13475) - 2604432..2605637 (+) 1206 WP_097844795.1 glycine betaine/L-proline ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21215.48 Da        Isoelectric Point: 5.0925

>NTDB_id=974884 AABL52_RS13465 WP_341519649.1 2602776..2603357(+) (clpP) [Bacillus paramobilis strain IMGN7]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINEQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKRDINKMIAEKTGQ
SIERVAHDTERDYFMTAAEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=974884 AABL52_RS13465 WP_341519649.1 2602776..2603357(+) (clpP) [Bacillus paramobilis strain IMGN7]
ATGAATGCAATTCCATATGTAGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGTTCAGAAATAAATGAACAAGTAGCAAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCGG
AAGATGCTGAGAAAGATATATTTTTATACATTAACAGCCCAGGCGGCTCGACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATCTCATTAAACCAGATGTACAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGGAAACGGTTTGCACTCCCTAATAGTGAAATTATGATTCACCAGCCACTAGGTGGTGCGCAAGGTCAGGCAA
CGGAAATTGAAATAACAGCAAAAAGAATACTAAAGTTAAAGCGTGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
TCAATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGCAGAAGCGAAAGAATATGGGATAGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pneumoniae Rx1

55.729

99.482

0.554
  clpP Streptococcus pneumoniae D39

55.729

99.482

0.554
  clpP Streptococcus pneumoniae R6

55.729

99.482

0.554
  clpP Streptococcus pneumoniae TIGR4

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pyogenes JRS4

53.968

97.927

0.528
  clpP Streptococcus pyogenes MGAS315

53.968

97.927

0.528
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

97.927

0.497

Multiple sequence alignment