Detailed information NTG0972458

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: WOC48_RS12400
• Genome accession: NZ_CP150777
• Coordinates: 2512150..2512620 (+)
• Length: 156 a.a.
• NCBI ID: WP_000934765.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TUM20825
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2507150..2517620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WOC48_RS12365 (WOC48_12340)	-	2507474..2507794 (+)	321	WP_001120197.1	DUF771 domain-containing protein	-
WOC48_RS12370 (WOC48_12345)	-	2507791..2507952 (+)	162	WP_000066020.1	DUF1270 domain-containing protein	-
WOC48_RS12375 (WOC48_12350)	-	2508045..2508305 (+)	261	WP_000291488.1	DUF1108 family protein	-
WOC48_RS12380 (WOC48_12355)	-	2508314..2508577 (+)	264	WP_001205732.1	hypothetical protein	-
WOC48_RS12385 (WOC48_12360)	-	2508574..2510529 (+)	1956	WP_064138715.1	AAA family ATPase	-
WOC48_RS12390 (WOC48_12365)	-	2510531..2511451 (+)	921	WP_000138475.1	recombinase RecT	-
WOC48_RS12395 (WOC48_12370)	-	2511532..2512149 (+)	618	WP_072353921.1	MBL fold metallo-hydrolase	-
WOC48_RS12400 (WOC48_12375)	ssbA	2512150..2512620 (+)	471	WP_000934765.1	single-stranded DNA-binding protein	Machinery gene
WOC48_RS12405 (WOC48_12380)	-	2512650..2513543 (+)	894	WP_000148328.1	DnaD domain-containing protein	-
WOC48_RS12410 (WOC48_12385)	-	2513550..2513768 (+)	219	WP_000338527.1	hypothetical protein	-
WOC48_RS12415 (WOC48_12390)	-	2513777..2514181 (+)	405	WP_000401978.1	RusA family crossover junction endodeoxyribonuclease	-
WOC48_RS12420 (WOC48_12395)	-	2514194..2514478 (+)	285	Protein_2440	SA1788 family PVL leukocidin-associated protein	-
WOC48_RS12425 (WOC48_12405)	rinB	2514522..2514671 (+)	150	WP_000595265.1	transcriptional activator RinB	-
WOC48_RS12430 (WOC48_12410)	-	2514830..2515480 (+)	651	WP_001005262.1	hypothetical protein	-
WOC48_RS12435 (WOC48_12415)	-	2515480..2515680 (+)	201	WP_001570807.1	DUF1514 family protein	-
WOC48_RS12440 (WOC48_12420)	-	2515703..2516173 (+)	471	WP_000282755.1	hypothetical protein	-
WOC48_RS12445 (WOC48_12425)	-	2516288..2516740 (+)	453	WP_000406191.1	nucleoside triphosphate pyrophosphohydrolase family protein	-
WOC48_RS12450 (WOC48_12430)	-	2516756..2517100 (+)	345	WP_000817289.1	HNH endonuclease	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17673.54 Da
• Isoelectric Point: 4.9627

>NTDB_id=972458 WOC48_RS12400 WP_000934765.1 2512150..2512620(+) (ssbA) [Staphylococcus aureus strain TUM20825]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=972458 WOC48_RS12400 WP_000934765.1 2512150..2512620(+) (ssbA) [Staphylococcus aureus strain TUM20825]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.932	100	0.635
ssb	Latilactobacillus sakei subsp. sakei 23K	51.765	100	0.564
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	67.949	0.404
ssb	Vibrio cholerae strain A1552	31.492	100	0.365
ssb	Neisseria meningitidis MC58	32.948	100	0.365
ssb	Neisseria gonorrhoeae MS11	32.948	100	0.365
ssb	Glaesserella parasuis strain SC1401	32.203	100	0.365