Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V8V52_RS03550 Genome accession   NZ_CP150648
Coordinates   703902..704483 (-) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus mycoides strain 4BM1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 698902..709483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS03525 (V8V52_03525) - 699669..700127 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  V8V52_RS03530 (V8V52_03530) rapZ 700148..701029 (+) 882 WP_002016084.1 RNase adapter RapZ -
  V8V52_RS03535 (V8V52_03535) - 701033..701986 (+) 954 WP_002016083.1 YvcK family protein -
  V8V52_RS03540 (V8V52_03540) whiA 702075..703025 (+) 951 WP_002016082.1 DNA-binding protein WhiA -
  V8V52_RS03545 (V8V52_03545) - 703049..703297 (+) 249 WP_002016081.1 HPr family phosphocarrier protein -
  V8V52_RS03550 (V8V52_03550) clpP 703902..704483 (-) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  V8V52_RS03555 (V8V52_03555) - 704724..705593 (-) 870 WP_002016080.1 DUF421 domain-containing protein -
  V8V52_RS03560 (V8V52_03560) - 705614..705820 (-) 207 WP_002034728.1 DUF1657 domain-containing protein -
  V8V52_RS03565 (V8V52_03565) spoVAE 705830..706180 (-) 351 WP_000575919.1 stage V sporulation protein AE -
  V8V52_RS03570 (V8V52_03570) spoVAD 706177..707193 (-) 1017 WP_088033335.1 stage V sporulation protein AD -
  V8V52_RS03575 (V8V52_03575) spoVAC 707194..707670 (-) 477 WP_002034730.1 stage V sporulation protein AC -
  V8V52_RS03580 (V8V52_03580) - 707699..708187 (-) 489 WP_002139164.1 YhcN/YlaJ family sporulation lipoprotein -
  V8V52_RS03585 (V8V52_03585) - 708295..708501 (-) 207 WP_000216167.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=970911 V8V52_RS03550 WP_001049163.1 703902..704483(-) (clpP) [Bacillus mycoides strain 4BM1]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=970911 V8V52_RS03550 WP_001049163.1 703902..704483(-) (clpP) [Bacillus mycoides strain 4BM1]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAGGA
TCGCATCATTATGCTTGGTAGCGCAATTGATGACAATGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATTTACATCAACAGCCCTGGTGGTTCTATCACAGCTGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTACGCACTTCCAAACAGTGAAGTTATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTTCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554

Multiple sequence alignment