Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V1467_RS16710 Genome accession   NZ_CP150481
Coordinates   3729134..3730354 (+) Length   406 a.a.
NCBI ID   WP_416306107.1    Uniprot ID   -
Organism   Neptunicella sp. SCSIO 80796     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3724134..3735354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1467_RS16685 pdhR 3724669..3725415 (-) 747 WP_416306102.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  V1467_RS16690 ampE 3725581..3726405 (-) 825 WP_416306103.1 beta-lactamase regulator AmpE -
  V1467_RS16695 - 3727002..3727520 (+) 519 WP_416306104.1 retropepsin-like aspartic protease family protein -
  V1467_RS16700 nadC 3727527..3728366 (+) 840 WP_416306105.1 carboxylating nicotinate-nucleotide diphosphorylase -
  V1467_RS16705 - 3728603..3729046 (+) 444 WP_416306106.1 pilin -
  V1467_RS16710 pilC 3729134..3730354 (+) 1221 WP_416306107.1 type II secretion system F family protein Machinery gene
  V1467_RS16715 pilD 3730536..3731411 (+) 876 WP_416306108.1 prepilin peptidase Machinery gene
  V1467_RS16720 coaE 3731408..3732007 (+) 600 WP_416306109.1 dephospho-CoA kinase -
  V1467_RS16725 zapD 3732097..3732849 (+) 753 WP_416306110.1 cell division protein ZapD -
  V1467_RS16730 yacG 3732918..3733151 (+) 234 WP_416306111.1 DNA gyrase inhibitor YacG -
  V1467_RS16735 mutT 3733247..3733633 (-) 387 WP_416306112.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43820.63 Da        Isoelectric Point: 9.5122

>NTDB_id=970538 V1467_RS16710 WP_416306107.1 3729134..3730354(+) (pilC) [Neptunicella sp. SCSIO 80796]
MAASSKSISVFVWDGVNRKGQSVKGEISAGNISEAKNLLRRQGISATKVKKFTKPLFGKGAEKINAADICMISRQIATML
AAGVTLIQTIDMIAHGHAKASMRKMLGEIANEVKAGNPLSSALRKHPMYFDDLYCDLVETGEQSGALETIYDRIATYKEK
SEALKSKIKKAMFYPIAVLVVAFIVTTILLLFVVPQFEEIFSSFGAELPAFTQMVIGMSRFLQDYGIFIAAGVGVGAFLF
ARQYKRSKNLRDSLDAKLLKVPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVFRDAILFMRREVAGG
TQMNTAMRATAVFPDMVVQMIAIGEEAGAVEDMLSKIATIYEREVDDMVDGLTALLEPMIMAVLGVVIGGLIVAMYLPIF
EMGNVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=970538 V1467_RS16710 WP_416306107.1 3729134..3730354(+) (pilC) [Neptunicella sp. SCSIO 80796]
ATGGCCGCATCGAGCAAATCAATTAGTGTCTTTGTCTGGGACGGTGTGAATCGTAAAGGTCAATCCGTTAAAGGTGAGAT
TTCAGCTGGCAATATCAGTGAAGCGAAAAATCTGCTGCGTCGTCAGGGTATTTCCGCCACCAAAGTCAAAAAATTTACCA
AACCATTATTTGGCAAAGGAGCTGAAAAAATTAATGCCGCCGATATCTGCATGATATCTAGGCAAATTGCCACAATGCTG
GCCGCCGGGGTTACCCTGATTCAGACCATCGATATGATTGCCCATGGGCATGCCAAAGCCTCGATGCGTAAAATGCTAGG
CGAGATTGCCAATGAAGTTAAAGCCGGTAATCCGCTTTCTTCCGCCCTACGCAAGCATCCCATGTATTTTGATGATCTAT
ATTGCGATCTGGTGGAAACCGGCGAACAATCCGGTGCGCTGGAAACTATCTATGATCGGATTGCCACCTATAAAGAAAAA
TCCGAAGCCTTAAAATCCAAAATCAAGAAAGCCATGTTTTACCCTATAGCGGTATTAGTAGTGGCTTTTATTGTTACCAC
TATTCTATTGCTATTTGTAGTACCTCAGTTTGAGGAGATTTTTAGCAGTTTTGGTGCCGAGTTACCTGCTTTTACTCAAA
TGGTTATAGGTATGTCGCGCTTTTTACAGGACTACGGTATTTTTATTGCCGCAGGTGTCGGAGTTGGGGCCTTCCTGTTT
GCGCGACAATATAAGCGCTCTAAAAATTTACGCGATTCGCTAGATGCCAAATTGCTTAAGGTACCGGTGATTGGTGAAAT
ACTAAAAAAGGCCTCTATCGCCCGTTTTACCCGTACCTTAGCCACCACCTTTGCTGCCGGTGTGCCGTTAATTGGGGCAC
TGGAATCGGCCGCTGGCGCTTCCGGTAATGCAGTATTTCGTGACGCCATTTTATTTATGCGTAGAGAAGTTGCCGGCGGT
ACCCAGATGAATACCGCCATGCGCGCTACCGCAGTTTTCCCTGATATGGTGGTACAGATGATCGCGATCGGAGAAGAAGC
TGGTGCGGTTGAAGATATGCTGAGTAAAATTGCTACTATTTACGAGCGGGAAGTGGATGATATGGTAGATGGACTAACCG
CGTTGCTGGAACCGATGATTATGGCGGTTTTAGGTGTTGTGATCGGTGGCTTAATTGTGGCAATGTATCTGCCCATCTTT
GAAATGGGTAATGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.635

100

0.576
  pilC Acinetobacter baylyi ADP1

51.961

100

0.522
  pilC Acinetobacter baumannii D1279779

51.861

99.261

0.515
  pilC Legionella pneumophila strain ERS1305867

50.245

100

0.505
  pilC Vibrio cholerae strain A1552

44.949

97.537

0.438
  pilG Neisseria meningitidis 44/76-A

43.75

98.522

0.431
  pilC Vibrio campbellii strain DS40M4

43.719

98.03

0.429
  pilG Neisseria gonorrhoeae MS11

43.5

98.522

0.429

Multiple sequence alignment