Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACLFK2_RS26460 Genome accession   NZ_CP177307
Coordinates   5743122..5743646 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Pa021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5738122..5748646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLFK2_RS26445 (ACLFK2_26445) aroB 5739238..5740344 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  ACLFK2_RS26450 (ACLFK2_26450) aroK 5740394..5740912 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACLFK2_RS26455 (ACLFK2_26455) pilQ 5740924..5743068 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  ACLFK2_RS26460 (ACLFK2_26460) comL/pilP 5743122..5743646 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACLFK2_RS26465 (ACLFK2_26465) pilO 5743643..5744266 (-) 624 Protein_5220 type 4a pilus biogenesis protein PilO -
  ACLFK2_RS26470 (ACLFK2_26470) pilN 5744263..5744859 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACLFK2_RS26475 (ACLFK2_26475) pilM 5744859..5745923 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACLFK2_RS26480 (ACLFK2_26480) - 5746108..5748576 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=970428 ACLFK2_RS26460 WP_003095836.1 5743122..5743646(-) (comL/pilP) [Pseudomonas aeruginosa strain Pa021]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=970428 ACLFK2_RS26460 WP_003095836.1 5743122..5743646(-) (comL/pilP) [Pseudomonas aeruginosa strain Pa021]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment