Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ACLF6N_RS15455 Genome accession   NZ_CP177279
Coordinates   2853461..2854465 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain KFRI-P74     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2848461..2859465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS15430 (ACLF6N_15430) acuA 2849388..2850020 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  ACLF6N_RS15435 (ACLF6N_15435) acuB 2850047..2850691 (+) 645 WP_014480568.1 acetoin utilization AcuB family protein -
  ACLF6N_RS15440 (ACLF6N_15440) acuC 2850688..2851851 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  ACLF6N_RS15445 (ACLF6N_15445) motS 2851862..2852590 (-) 729 WP_412052450.1 flagellar motor protein MotS -
  ACLF6N_RS15450 (ACLF6N_15450) motP 2852580..2853398 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  ACLF6N_RS15455 (ACLF6N_15455) ccpA 2853461..2854465 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ACLF6N_RS15460 (ACLF6N_15460) aroX 2854741..2855817 (-) 1077 WP_041339769.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ACLF6N_RS15465 (ACLF6N_15465) ytxJ 2856053..2856379 (-) 327 WP_015251445.1 bacillithiol system redox-active protein YtxJ -
  ACLF6N_RS15470 (ACLF6N_15470) ytxH 2856403..2856858 (-) 456 WP_069964251.1 YtxH domain-containing protein -
  ACLF6N_RS15475 (ACLF6N_15475) ytxG 2856889..2857311 (-) 423 WP_024572894.1 DUF948 domain-containing protein -
  ACLF6N_RS15480 (ACLF6N_15480) murC 2857473..2858771 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=970316 ACLF6N_RS15455 WP_003229285.1 2853461..2854465(-) (ccpA) [Bacillus subtilis strain KFRI-P74]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=970316 ACLF6N_RS15455 WP_003229285.1 2853461..2854465(-) (ccpA) [Bacillus subtilis strain KFRI-P74]
ATGAGCAATATTACGATCTACGACGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAACT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGTCTCATGGTTCGTCCGCAGCTGTCAACAGTTGTTCAGC
CGACATACGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATCGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment