Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   ACJVG6_RS03770 Genome accession   NZ_CP177180
Coordinates   826766..827686 (-) Length   306 a.a.
NCBI ID   WP_004182333.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 821766..832686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS03740 - 822973..823169 (-) 197 Protein_678 transposase -
  ACJVG6_RS03745 - 823202..823714 (+) 513 WP_004182329.1 NAD(P)H-dependent oxidoreductase -
  ACJVG6_RS03750 - 823892..823990 (+) 99 Protein_680 XRE family transcriptional regulator -
  ACJVG6_RS03755 comR/comR1 824078..824989 (-) 912 WP_004182330.1 helix-turn-helix domain-containing protein Regulator
  ACJVG6_RS03760 - 825145..825864 (-) 720 WP_004182331.1 ABC transporter permease -
  ACJVG6_RS03765 - 825857..826693 (-) 837 WP_004182332.1 ABC transporter ATP-binding protein -
  ACJVG6_RS03770 comR/comR1 826766..827686 (-) 921 WP_004182333.1 helix-turn-helix domain-containing protein Regulator
  ACJVG6_RS03775 - 827904..828425 (+) 522 WP_004182334.1 RDD family protein -
  ACJVG6_RS03780 - 828550..829386 (+) 837 WP_004182335.1 multidrug resistance efflux transporter family protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 36101.33 Da        Isoelectric Point: 4.4824

>NTDB_id=969587 ACJVG6_RS03770 WP_004182333.1 826766..827686(-) (comR/comR1) [Streptococcus salivarius strain MRD-KRBY]
MSEDIKIEIGKRIREERERQGLTREQVCDTEEELTVKQLMRIELGRSLPTIVKLQYISDKLSVSLNYLLGETKLDIPEDY
YKAKYKLMKSPVYGDSERIKKKLKDIEELYDNYIDVLPEDELLAIDLIERTLNFMISEEESLIESVFEDYLVQALKKEAY
SLNDLLLISYYAFRCQDYDYDKERIEKFRRKLINQELQGEELFNVELIGALSAIAGIYVMHHDYKEMKSVVDKMYVLIDK
TLQQAYKPAVLVFEAKYYLFYENNRDKATELYNTATVLAEAFGDQVFIKNLKMEMENDLDTSNESK

Nucleotide


Download         Length: 921 bp        

>NTDB_id=969587 ACJVG6_RS03770 WP_004182333.1 826766..827686(-) (comR/comR1) [Streptococcus salivarius strain MRD-KRBY]
ATGTCAGAAGATATTAAAATCGAGATTGGAAAAAGAATTCGTGAAGAACGTGAACGTCAAGGGTTAACACGTGAGCAAGT
TTGTGATACCGAAGAAGAATTAACCGTCAAACAACTGATGAGAATTGAGCTTGGGCGTTCTTTACCAACTATTGTCAAAC
TTCAATACATCAGTGATAAATTGAGTGTTTCCCTCAACTATTTGTTAGGTGAAACAAAACTAGACATTCCTGAAGACTAT
TACAAGGCTAAATATAAACTTATGAAGTCTCCTGTCTATGGTGACTCGGAACGTATCAAGAAAAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGATGTGCTACCAGAGGACGAGCTTTTAGCTATTGATCTCATTGAAAGAACCCTGAATT
TTATGATTAGTGAGGAAGAAAGTCTTATTGAATCTGTATTTGAAGACTATTTGGTTCAAGCTTTGAAAAAAGAAGCATAT
TCCTTAAATGACCTTCTATTAATTTCATACTATGCATTTCGATGTCAGGATTATGACTATGATAAAGAGAGAATTGAAAA
ATTTAGACGAAAATTAATTAATCAAGAATTACAAGGTGAAGAGCTGTTTAATGTTGAACTGATAGGTGCTTTATCAGCTA
TAGCTGGGATATATGTAATGCATCATGACTATAAAGAAATGAAGTCTGTTGTTGATAAAATGTATGTTCTTATTGATAAG
ACACTTCAACAAGCTTATAAACCCGCAGTACTTGTTTTTGAAGCGAAATATTATCTATTCTATGAGAACAATAGAGATAA
AGCAACCGAGCTCTATAATACAGCTACCGTACTAGCCGAAGCTTTTGGTGACCAAGTCTTCATCAAAAATCTTAAAATGG
AAATGGAAAATGATTTAGATACTAGTAACGAGTCAAAGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

40.339

96.405

0.389
  comR Streptococcus salivarius strain HSISS4

40.69

94.771

0.386
  comR Streptococcus thermophilus LMD-9

40.345

94.771

0.382
  comR Streptococcus thermophilus LMG 18311

40.345

94.771

0.382
  comR Streptococcus salivarius SK126

40.493

92.81

0.376
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

38.488

95.098

0.366