Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   ACJVG6_RS03755 Genome accession   NZ_CP177180
Coordinates   824078..824989 (-) Length   303 a.a.
NCBI ID   WP_004182330.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 819078..829989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS03740 - 822973..823169 (-) 197 Protein_678 transposase -
  ACJVG6_RS03745 - 823202..823714 (+) 513 WP_004182329.1 NAD(P)H-dependent oxidoreductase -
  ACJVG6_RS03750 - 823892..823990 (+) 99 Protein_680 XRE family transcriptional regulator -
  ACJVG6_RS03755 comR/comR1 824078..824989 (-) 912 WP_004182330.1 helix-turn-helix domain-containing protein Regulator
  ACJVG6_RS03760 - 825145..825864 (-) 720 WP_004182331.1 ABC transporter permease -
  ACJVG6_RS03765 - 825857..826693 (-) 837 WP_004182332.1 ABC transporter ATP-binding protein -
  ACJVG6_RS03770 comR/comR1 826766..827686 (-) 921 WP_004182333.1 helix-turn-helix domain-containing protein Regulator
  ACJVG6_RS03775 - 827904..828425 (+) 522 WP_004182334.1 RDD family protein -
  ACJVG6_RS03780 - 828550..829386 (+) 837 WP_004182335.1 multidrug resistance efflux transporter family protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35861.24 Da        Isoelectric Point: 4.5571

>NTDB_id=969586 ACJVG6_RS03755 WP_004182330.1 824078..824989(-) (comR/comR1) [Streptococcus salivarius strain MRD-KRBY]
MSEEIKIEIGKRIREERERQGLTREHVCDTEEELTVKQLMRIELGRSLPTIVKLQYISDKLGVSLNYLLGETKLDIPEDY
YQAKYKLMKSPVYGDLERIKKKLKDIEELYDNYIDILPEEELLTIDIIERTLNFISEEKKEDLVEIVYEDYLNQVLKKEE
YTLNDLLLIKYYTFQCQVGDYDEEIVESFRCKLINQELQGEELVNVELLGALSTIGGIYVMHHDYRNMKTIVDKMHTIID
KTLQHAYKPAVLIFEAKYYLFYENNRDKATELYNTATVLAEAFGDQVFIKNLKMEMEKDLNIK

Nucleotide


Download         Length: 912 bp        

>NTDB_id=969586 ACJVG6_RS03755 WP_004182330.1 824078..824989(-) (comR/comR1) [Streptococcus salivarius strain MRD-KRBY]
ATGTCTGAAGAGATTAAAATCGAGATTGGAAAAAGAATTCGTGAAGAACGTGAACGTCAAGGATTAACACGTGAGCACGT
TTGTGATACCGAAGAAGAATTAACTGTCAAACAGTTGATGAGAATCGAGCTCGGTCGCTCATTACCAACCATTGTCAAAC
TGCAGTATATCAGTGATAAATTAGGAGTTTCCCTCAACTACCTGTTAGGTGAAACAAAACTAGACATTCCTGAAGACTAT
TATCAGGCTAAATATAAACTCATGAAGTCTCCTGTCTATGGCGACCTCGAACGTATCAAGAAAAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGATATTCTACCAGAAGAAGAACTATTAACCATTGATATCATTGAAAGAACCCTGAATT
TTATATCTGAAGAGAAGAAAGAAGATCTTGTTGAGATTGTATATGAAGACTATTTGAACCAGGTATTAAAAAAAGAAGAG
TACACCTTGAATGACCTTCTGCTAATAAAATACTATACCTTTCAATGTCAAGTTGGTGACTATGATGAAGAAATTGTTGA
AAGTTTTCGATGTAAATTAATTAATCAAGAATTACAAGGGGAAGAGCTAGTTAATGTTGAACTACTAGGGGCATTGTCAA
CTATAGGTGGAATCTATGTGATGCATCATGATTATAGAAATATGAAAACTATTGTCGATAAAATGCATACTATTATTGAT
AAGACGCTACAACATGCTTACAAACCCGCCGTACTCATTTTTGAAGCGAAATATTATCTTTTCTATGAGAACAATAGAGA
TAAAGCGACTGAGCTTTATAATACAGCTACCGTACTAGCTGAAGCTTTTGGTGATCAAGTCTTCATCAAAAATCTTAAAA
TGGAAATGGAAAAAGATTTAAACATAAAATAG

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

40.878

97.69

0.399
  comR Streptococcus salivarius strain HSISS4

40.878

97.69

0.399
  comR Streptococcus thermophilus LMD-9

41.379

95.71

0.396
  comR Streptococcus thermophilus LMG 18311

41.379

95.71

0.396
  comR Streptococcus salivarius SK126

41.197

93.729

0.386
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

39.384

96.37

0.38