Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   MHB78_RS21030 Genome accession   NZ_CP150286
Coordinates   3987879..3988460 (+) Length   193 a.a.
NCBI ID   WP_046131841.1    Uniprot ID   A0AAE2JUY9
Organism   Bacillus sp. FSL K6-0138     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3982879..3993460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS21010 (MHB78_21010) - 3983806..3985257 (+) 1452 WP_046131844.1 glycoside hydrolase family 68 protein -
  MHB78_RS21015 (MHB78_21015) - 3985338..3986873 (+) 1536 WP_099047077.1 glycoside hydrolase family 32 protein -
  MHB78_RS21020 (MHB78_21020) - 3987071..3987502 (+) 432 WP_046131842.1 SMI1/KNR4 family protein -
  MHB78_RS21030 (MHB78_21030) clpP 3987879..3988460 (+) 582 WP_046131841.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  MHB78_RS21035 (MHB78_21035) - 3988518..3989117 (-) 600 WP_046131840.1 DJ-1/PfpI family protein -
  MHB78_RS21040 (MHB78_21040) - 3989146..3989721 (-) 576 WP_046131839.1 TIGR00730 family Rossman fold protein -
  MHB78_RS21045 (MHB78_21045) - 3989834..3990157 (+) 324 WP_046131838.1 MazG-like family protein -
  MHB78_RS21050 (MHB78_21050) - 3990154..3991131 (+) 978 WP_046131837.1 HD domain-containing protein -
  MHB78_RS21055 (MHB78_21055) - 3991170..3992787 (-) 1618 Protein_4103 solute carrier family 23 protein -
  MHB78_RS21060 (MHB78_21060) - 3992812..3993398 (-) 587 Protein_4104 carbonic anhydrase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21270.45 Da        Isoelectric Point: 4.9255

>NTDB_id=969575 MHB78_RS21030 WP_046131841.1 3987879..3988460(+) (clpP) [Bacillus sp. FSL K6-0138]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQLIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEIIERDTDRDNFKSAEEAKEYGLIDKILTRR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=969575 MHB78_RS21030 WP_046131841.1 3987879..3988460(+) (clpP) [Bacillus sp. FSL K6-0138]
ATGAATTTAATACCTACAGTCATTGAACAGACGAATCGCGGGGAAAGAGCATATGACATCTACTCACGCCTGCTGAAAGA
CCGCATCATTATGCTAGGGTCGGCAATCGATGACAATGTTGCGAACTCCATTGTATCACAGCTTTTGTTCCTTGAAGCGG
AAGATCCTGAAAAAGATATCAGCATCTACATTAACAGCCCGGGCGGCTCCATTACGGCCGGTATGGCGATCTATGATACG
ATGCAGCTTATTAAGCCGCAAGTCTCCACGATTTGTACGGGAATGGCGGCATCCATGGGTGCGTTCCTTCTTGCTGCAGG
TGAGAAAGGGAAACGCTATGCCCTTCCAAACAGTGAAGTGATGATTCACCAGCCGCTCGGCGGAGCTCAAGGTCAGGCGA
CTGAAATCGAAATTGCCGCAAAACGCATTCTTTCATTGCGCGACAAGCTGAACAAAATTCTTGCGGAACGCACTGGACAG
CCGCTTGAAATCATTGAGCGCGACACTGACCGCGACAACTTTAAATCGGCTGAAGAAGCAAAAGAATACGGCTTAATCGA
TAAAATCCTGACGCGCAGGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

94.271

99.482

0.938
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.947

98.446

0.679
  clpP Streptococcus thermophilus LMG 18311

58.639

98.964

0.58
  clpP Streptococcus thermophilus LMD-9

58.639

98.964

0.58
  clpP Streptococcus pneumoniae Rx1

57.895

98.446

0.57
  clpP Streptococcus pneumoniae D39

57.895

98.446

0.57
  clpP Streptococcus pneumoniae R6

57.895

98.446

0.57
  clpP Streptococcus pneumoniae TIGR4

57.895

98.446

0.57
  clpP Lactococcus lactis subsp. cremoris KW2

57.368

98.446

0.565
  clpP Streptococcus pyogenes JRS4

56.316

98.446

0.554
  clpP Streptococcus pyogenes MGAS315

56.316

98.446

0.554
  clpP Streptococcus mutans UA159

54.974

98.964

0.544
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.263

98.446

0.544

Multiple sequence alignment