Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACK2I7_RS07370 Genome accession   NZ_CP176632
Coordinates   1503814..1506168 (+) Length   784 a.a.
NCBI ID   WP_057489824.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SFAD 40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1498814..1511168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I7_RS07350 - 1500986..1501534 (-) 549 WP_021002135.1 CvpA family protein -
  ACK2I7_RS07355 - 1501531..1501836 (-) 306 WP_003026418.1 hypothetical protein -
  ACK2I7_RS07360 rnhC 1501922..1502812 (+) 891 WP_021002136.1 ribonuclease HIII -
  ACK2I7_RS07365 lepB 1502816..1503430 (+) 615 WP_021002137.1 signal peptidase I -
  ACK2I7_RS07370 recD/recD2/recDB 1503814..1506168 (+) 2355 WP_057489824.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACK2I7_RS07375 - 1506239..1506637 (+) 399 Protein_1429 transposase -
  ACK2I7_RS07380 - 1506960..1507649 (-) 690 WP_021002139.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ACK2I7_RS07385 - 1507901..1508917 (+) 1017 WP_021002140.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACK2I7_RS07390 galU 1508945..1509844 (+) 900 WP_057489825.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACK2I7_RS07395 - 1510418..1510741 (-) 324 WP_003028637.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88511.69 Da        Isoelectric Point: 4.6963

>NTDB_id=967907 ACK2I7_RS07370 WP_057489824.1 1503814..1506168(+) (recD/recD2/recDB) [Streptococcus anginosus strain SFAD 40]
MEFYFSGTIERIIFENPSSFFRILLLDINDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNAIDKVLAEPEKLKNIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELAYLIEEDKVQNVDTKIFENSLFFAEEGIRSNLLRILEKGKQNKFEPEKIEAAI
TQIENEFAISYDVTQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLRKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVNLASQIQKGILPPDFIEKKADRSYFEARSEHILQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQLVFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDSNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVIILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLTDEKVIHTSVNNLETTVEKYILTEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=967907 ACK2I7_RS07370 WP_057489824.1 1503814..1506168(+) (recD/recD2/recDB) [Streptococcus anginosus strain SFAD 40]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTAACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACGGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGACAACGCGATTGATAAAGTCTTAGCAGAGCCAGAAAAATTAAAGAATATTGCAGGTCTTTCTGCTA
AAAACCGTGAAGCCTTTCTCACAAAACTAAGACAAAATTACGGCACCGAGAGAATTCTTGCCAAGCTATCTGAATACGGT
ATCCCGAACAAGCTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGTTTTCGTGCTGGGTTGCTTCACACGCTCCTAACCCAGTCTATGGAAAAAGGCGACACTTATCTTGAAGCCAAA
GAACTTCTAGAACATACGATTGAGCTCCTCGAAAGTTCCCGTCAGATTGAGTTAGACCCAAGTTCTGTTGCGGATGAGCT
GGCATATTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGTAGCAATCTCTTGCGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGGAAAAAATCGAAGCTGCTATT
ACTCAAATCGAAAATGAGTTTGCCATTTCCTATGATGTGACTCAAAAACAAGCAATTTGTGACGCTATCAATCACAAAAT
TTTCATCCTAACGGGTGGTCCCGGAACAGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTATGCTCTGCTGCATG
GGTTGGATTTGCGCAAATCTCAAGATTTGCCTATTCTTCTAGCCGCTCCAACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCAACGATTCATCGGCATTTAGGCATGACAGGAGACGACGACACCAGCCATTTAGACGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAATATCT
CTTCCAACAGCAAACTTCTCATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCAACTTAGC
CAGCCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCTGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTACTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACGGATTGCCAATACCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGTA
ATGTCTTTAACGGCGATTTGGGTTATATCACTGATTTGCTGCCAGCCAAATATACTGATTCAAAACAGGACGAGTTGACT
ATCAACTTTGACAGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAATCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTCCTAACTGATGAAAAAGTTATACACACTTCTGT
GAATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.365

95.281

0.394

Multiple sequence alignment