Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   MKY51_RS05015 Genome accession   NZ_CP150231
Coordinates   1045578..1046837 (+) Length   419 a.a.
NCBI ID   WP_339175630.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0691     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1040578..1051837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY51_RS04990 (MKY51_04990) - 1041529..1042257 (+) 729 WP_339175625.1 SDR family oxidoreductase -
  MKY51_RS04995 (MKY51_04995) - 1042305..1042562 (+) 258 WP_339175626.1 DUF3243 domain-containing protein -
  MKY51_RS05000 (MKY51_05000) - 1043075..1043863 (+) 789 WP_339175627.1 DUF3388 domain-containing protein -
  MKY51_RS05005 (MKY51_05005) - 1043912..1044814 (+) 903 WP_339175628.1 RodZ domain-containing protein -
  MKY51_RS05010 (MKY51_05010) pgsA 1044861..1045439 (+) 579 WP_339175629.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY51_RS05015 (MKY51_05015) cinA 1045578..1046837 (+) 1260 WP_339175630.1 competence/damage-inducible protein A Machinery gene
  MKY51_RS05020 (MKY51_05020) recA 1047004..1048074 (+) 1071 WP_339175631.1 recombinase RecA Machinery gene
  MKY51_RS05025 (MKY51_05025) - 1048135..1048464 (+) 330 WP_339175632.1 hypothetical protein -
  MKY51_RS05030 (MKY51_05030) rny 1049175..1050728 (+) 1554 WP_339175634.1 ribonuclease Y -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 45798.46 Da        Isoelectric Point: 4.9389

>NTDB_id=967087 MKY51_RS05015 WP_339175630.1 1045578..1046837(+) (cinA) [Solibacillus sp. FSL R5-0691]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHTVVGDNEARLLEAIKIAEQRADVIIFSGGLGPTKDDLTKEA
IAKHLNRTLVFDETALFAIEEFFSKQRRPMTENNRKQALVLDGCDVLLNQHGMAPGMFLKENDRIYILLPGPPKELEPMF
QYETKPKLAALLHDGGVILSHVLRFYGIGEADLETRIQNILDEQTNPTVAPLASDGEVTLRITAKAQNEPQAFRLIELKK
REILDIVGEYYYGVNDESLGFKLVQMLLENELTVSAAESLTAGLFQSELAEVPGVGSALIGGVVTYTKEAKIKHLGVSGE
LLDEYGIVSSECAAAMATQVREKFGTDIGVGLTGAAGPGDHDGQPAGSIWVGIKIGDTEPLTYRLQLSGSRNTNRIRAVK
FTFSYLMRELANKGYKKLI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=967087 MKY51_RS05015 WP_339175630.1 1045578..1046837(+) (cinA) [Solibacillus sp. FSL R5-0691]
ATGAATGCAGAAATTATAGCGGTAGGATCAGAATTATTATTAGGACAGATTGCCAATACGAATGCGAAGTTTATTTCGAG
CCAGCTTTCGGAACTTGGCATTAATGTTTATTATCATACAGTTGTGGGGGATAACGAGGCACGCCTTTTAGAAGCGATCA
AAATTGCGGAACAGCGCGCGGATGTCATTATCTTCTCGGGTGGCTTAGGCCCGACAAAGGATGATTTAACGAAGGAAGCG
ATAGCGAAACATTTGAATCGCACATTAGTGTTTGATGAAACAGCACTGTTTGCTATTGAAGAGTTCTTCTCGAAGCAAAG
ACGACCGATGACGGAAAACAACCGGAAACAGGCACTAGTATTGGATGGCTGTGATGTATTGCTGAACCAGCACGGGATGG
CACCGGGTATGTTTTTAAAGGAAAATGACCGTATTTATATTTTACTGCCGGGTCCACCAAAAGAGTTAGAGCCGATGTTC
CAATATGAAACGAAGCCAAAACTGGCGGCACTTCTGCATGACGGCGGGGTTATTTTATCGCATGTCCTGCGCTTTTACGG
TATCGGTGAAGCAGATCTGGAAACACGCATACAGAACATTTTGGATGAACAGACAAATCCAACAGTTGCTCCGCTTGCGT
CAGACGGTGAAGTAACATTGCGCATAACGGCAAAAGCGCAAAACGAACCACAGGCATTCCGTTTGATTGAATTGAAGAAA
CGCGAAATTCTCGATATTGTCGGAGAATACTATTACGGTGTAAATGATGAGTCGTTAGGATTCAAGCTTGTGCAAATGCT
TCTGGAAAATGAATTGACGGTTTCCGCTGCCGAAAGTTTAACGGCCGGTCTGTTCCAGTCGGAGCTGGCAGAAGTTCCGG
GTGTCGGGTCCGCATTAATCGGCGGTGTCGTAACGTATACGAAAGAAGCGAAAATCAAACATCTCGGAGTTTCGGGTGAA
CTGCTTGACGAATACGGGATTGTCAGCAGTGAATGTGCTGCGGCAATGGCGACACAAGTCCGTGAAAAATTCGGGACAGA
TATCGGTGTCGGCCTGACAGGAGCTGCCGGACCGGGCGATCATGACGGACAGCCTGCAGGATCGATCTGGGTTGGGATTA
AGATCGGTGACACTGAACCGTTGACGTACCGACTGCAATTATCCGGCTCAAGAAATACAAACCGGATCCGCGCAGTGAAG
TTTACGTTCAGCTATTTAATGAGGGAATTGGCAAACAAGGGGTACAAAAAGCTGATTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.582

98.091

0.506

  cinA Streptococcus mutans UA159

43.614

99.045

0.432

  cinA Streptococcus pneumoniae TIGR4

42.654

100

0.43

  cinA Streptococcus pneumoniae Rx1

42.417

100

0.427

  cinA Streptococcus pneumoniae R6

42.417

100

0.427

  cinA Streptococcus pneumoniae D39

42.18

100

0.425

  cinA Streptococcus mitis SK321

45.052

91.647

0.413

  cinA Streptococcus mitis NCTC 12261

44.792

91.647

0.411


Multiple sequence alignment