NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	ACJPHY_RS14040	Genome accession	NZ_CP176424
Coordinates	3083932..3084573 (-)	Length	213 a.a.
NCBI ID	WP_003098129.1	Uniprot ID	A0A0H2Z9P5
Organism	Pseudomonas aeruginosa strain IGLPR01
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3078932..3089573

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJPHY_RS14025	hupB	3079611..3079883 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
ACJPHY_RS14030	lon	3080019..3082415 (-)	2397	WP_003124759.1	endopeptidase La	-
ACJPHY_RS14035	clpX	3082547..3083827 (-)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACJPHY_RS14040	clpP	3083932..3084573 (-)	642	WP_003098129.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACJPHY_RS14045	tig	3084667..3085977 (-)	1311	WP_003087920.1	trigger factor	-
ACJPHY_RS14050	parR	3086209..3086916 (+)	708	WP_003087915.1	response regulator transcription factor ParR	-
ACJPHY_RS14055	parS	3086917..3088203 (+)	1287	WP_003087912.1	sensor histidine kinase ParS	-

Sequence

Protein

Download Length: 213 a.a. Molecular weight: 23502.14 Da Isoelectric Point: 6.3772

                                >NTDB_id=966931 ACJPHY_RS14040 WP_003098129.1 3083932..3084573(-) (clpP) [Pseudomonas aeruginosa strain IGLPR01]

MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL

FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide

Download Length: 642 bp

                                >NTDB_id=966931 ACJPHY_RS14040 WP_003098129.1 3083932..3084573(-) (clpP) [Pseudomonas aeruginosa strain IGLPR01]

ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC

CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG

ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC

AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC

CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT

CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC

TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG

TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT

AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2Z9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.708	90.141	0.61
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.789	89.202	0.587
clpP	Lactococcus lactis subsp. cremoris KW2	53.299	92.488	0.493
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.777	92.488	0.479
clpP	Streptococcus mutans UA159	50.51	92.019	0.465
clpP	Streptococcus pneumoniae R6	50.769	91.549	0.465
clpP	Streptococcus pneumoniae TIGR4	50.769	91.549	0.465
clpP	Streptococcus pyogenes JRS4	50.769	91.549	0.465
clpP	Streptococcus pyogenes MGAS315	50.769	91.549	0.465
clpP	Streptococcus thermophilus LMG 18311	50.769	91.549	0.465
clpP	Streptococcus thermophilus LMD-9	50.769	91.549	0.465
clpP	Streptococcus pneumoniae Rx1	50.769	91.549	0.465
clpP	Streptococcus pneumoniae D39	50.769	91.549	0.465

Detailed information NTG0966931