Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY42_RS32635 Genome accession   NZ_CP150216
Coordinates   7258108..7258593 (-) Length   161 a.a.
NCBI ID   WP_024629535.1    Uniprot ID   A0A7Y6BSP4
Organism   Paenibacillus sp. FSL W7-1088     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7253108..7263593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY42_RS32615 (MKY42_32615) - 7253474..7254436 (-) 963 WP_090902674.1 ABC transporter permease -
  MKY42_RS32620 (MKY42_32620) - 7254513..7256255 (-) 1743 WP_090902672.1 ABC transporter substrate-binding protein -
  MKY42_RS32625 (MKY42_32625) - 7256967..7257560 (-) 594 WP_179262277.1 M15 family metallopeptidase -
  MKY42_RS32630 (MKY42_32630) rpsR 7257780..7258052 (-) 273 WP_062327715.1 30S ribosomal protein S18 -
  MKY42_RS32635 (MKY42_32635) ssbA 7258108..7258593 (-) 486 WP_024629535.1 single-stranded DNA-binding protein Machinery gene
  MKY42_RS32640 (MKY42_32640) rpsF 7258645..7258938 (-) 294 WP_024629534.1 30S ribosomal protein S6 -
  MKY42_RS32645 (MKY42_32645) - 7259140..7259334 (+) 195 WP_024629533.1 YjzC family protein -
  MKY42_RS32655 (MKY42_32655) - 7259959..7260168 (-) 210 WP_090902668.1 DUF951 domain-containing protein -
  MKY42_RS32660 (MKY42_32660) - 7260158..7261099 (-) 942 WP_179262275.1 mechanosensitive ion channel family protein -
  MKY42_RS32665 (MKY42_32665) - 7261114..7261377 (-) 264 WP_029880815.1 DUF3343 domain-containing protein -
  MKY42_RS32670 (MKY42_32670) yyaC 7261495..7262100 (+) 606 WP_024629529.1 spore protease YyaC -
  MKY42_RS32675 (MKY42_32675) - 7262075..7262575 (-) 501 WP_090902664.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17861.67 Da        Isoelectric Point: 4.8369

>NTDB_id=966622 MKY42_RS32635 WP_024629535.1 7258108..7258593(-) (ssbA) [Paenibacillus sp. FSL W7-1088]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNNGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=966622 MKY42_RS32635 WP_024629535.1 7258108..7258593(-) (ssbA) [Paenibacillus sp. FSL W7-1088]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTGCGTTATACTCCAGCTGGAGTAGCTGTAAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAACGGGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCTGAGACTTGTGCAAACTATTTGCGCAAAGGACGCCTAGCTGCAGTCGAAGGACGCATTCAAGTACGG
AATTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAACGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAACGGTGGCGGCGGTGGGCAACCAATGCGTGAAGAGCCTTCTTACGGAGGCGGCGGGCGCGCGAACAATA
ACAACAATTCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y6BSP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

49.711

100

0.534
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.963

67.702

0.379
  ssb Neisseria meningitidis MC58

33.333

100

0.373
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.153

73.292

0.36
  ssb Neisseria gonorrhoeae MS11

32.584

100

0.36

Multiple sequence alignment