Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NYE32_RS07180 Genome accession   NZ_CP150201
Coordinates   1603120..1605090 (-) Length   656 a.a.
NCBI ID   WP_148512819.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598120..1610090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS07160 (NYE32_07160) amiF 1598623..1599552 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  NYE32_RS07165 (NYE32_07165) amiE 1599545..1600630 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  NYE32_RS07170 (NYE32_07170) amiD 1600640..1601566 (-) 927 WP_339156952.1 oligopeptide ABC transporter permease OppC Regulator
  NYE32_RS07175 (NYE32_07175) amiC 1601566..1603059 (-) 1494 WP_060971834.1 ABC transporter permease Regulator
  NYE32_RS07180 (NYE32_07180) amiA 1603120..1605090 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  NYE32_RS07185 (NYE32_07185) amiA 1605272..1607242 (-) 1971 WP_339156953.1 peptide ABC transporter substrate-binding protein Regulator
  NYE32_RS07190 (NYE32_07190) - 1607594..1608843 (+) 1250 Protein_1375 ISL3 family transposase -
  NYE32_RS07195 (NYE32_07195) pta 1608898..1609881 (-) 984 WP_288628479.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72950.33 Da        Isoelectric Point: 5.1980

>NTDB_id=966180 NYE32_RS07180 WP_148512819.1 1603120..1605090(-) (amiA) [Streptococcus sp. FSL R7-0248]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELTKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFDSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=966180 NYE32_RS07180 WP_148512819.1 1603120..1605090(-) (amiA) [Streptococcus sp. FSL R7-0248]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGATTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAGAAGACAGAGTCAATTT
ATTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAACGGTACTGATAAAGACTTCTCTAAAGTTGGTGTTAAA
GCACTTGATGACTACACTCTTCAGTACACTCTTAAACAACCAGAACCATACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTTAACGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGACTAAAAATGAAAACTATTGGGATAAGAAG
AATGTTCACTTTGATGGCATCAAACTTTCTTTCTACGATGCATCTGACCAAGAATCACTTGTCCGTAATTTCACTGATGG
CGCTTATAGTCAAGCACGTTTATATCCAACAAGCTCAAACTTTGATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTCGCTATTGACCGTAC
TGCTTATTCAGCACAACTTAATGGTGAAAAGGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAGGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTTGGTAAAGAAAATGTTGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCTGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCACCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGATAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

75.038

100

0.752

Multiple sequence alignment