Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   NYE32_RS07175 Genome accession   NZ_CP150201
Coordinates   1601566..1603059 (-) Length   497 a.a.
NCBI ID   WP_060971834.1    Uniprot ID   A0AA45CT26
Organism   Streptococcus sp. FSL R7-0248     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596566..1608059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS07145 (NYE32_07145) - 1596695..1597072 (+) 378 WP_021143815.1 GntR family transcriptional regulator -
  NYE32_RS07150 (NYE32_07150) - 1597077..1597775 (+) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  NYE32_RS07155 (NYE32_07155) - 1597787..1598572 (+) 786 WP_070576856.1 ABC transporter permease -
  NYE32_RS07160 (NYE32_07160) amiF 1598623..1599552 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  NYE32_RS07165 (NYE32_07165) amiE 1599545..1600630 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  NYE32_RS07170 (NYE32_07170) amiD 1600640..1601566 (-) 927 WP_339156952.1 oligopeptide ABC transporter permease OppC Regulator
  NYE32_RS07175 (NYE32_07175) amiC 1601566..1603059 (-) 1494 WP_060971834.1 ABC transporter permease Regulator
  NYE32_RS07180 (NYE32_07180) amiA 1603120..1605090 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  NYE32_RS07185 (NYE32_07185) amiA 1605272..1607242 (-) 1971 WP_339156953.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55889.65 Da        Isoelectric Point: 9.9934

>NTDB_id=966179 NYE32_RS07175 WP_060971834.1 1601566..1603059(-) (amiC) [Streptococcus sp. FSL R7-0248]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=966179 NYE32_RS07175 WP_060971834.1 1601566..1603059(-) (amiC) [Streptococcus sp. FSL R7-0248]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCAACACGTGATGTTCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACAAAGCATAAATATTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAAGATGAACCTTGGTACCTCTTACCCAACCTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCAACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTAATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGCGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCCAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.195

100

0.992
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.787

100

0.978

Multiple sequence alignment