Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NYE32_RS07170 Genome accession   NZ_CP150201
Coordinates   1600640..1601566 (-) Length   308 a.a.
NCBI ID   WP_339156952.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595640..1606566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS07140 (NYE32_07140) - 1595719..1596513 (-) 795 WP_021143816.1 HAD family hydrolase -
  NYE32_RS07145 (NYE32_07145) - 1596695..1597072 (+) 378 WP_021143815.1 GntR family transcriptional regulator -
  NYE32_RS07150 (NYE32_07150) - 1597077..1597775 (+) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  NYE32_RS07155 (NYE32_07155) - 1597787..1598572 (+) 786 WP_070576856.1 ABC transporter permease -
  NYE32_RS07160 (NYE32_07160) amiF 1598623..1599552 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  NYE32_RS07165 (NYE32_07165) amiE 1599545..1600630 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  NYE32_RS07170 (NYE32_07170) amiD 1600640..1601566 (-) 927 WP_339156952.1 oligopeptide ABC transporter permease OppC Regulator
  NYE32_RS07175 (NYE32_07175) amiC 1601566..1603059 (-) 1494 WP_060971834.1 ABC transporter permease Regulator
  NYE32_RS07180 (NYE32_07180) amiA 1603120..1605090 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34577.75 Da        Isoelectric Point: 9.7054

>NTDB_id=966178 NYE32_RS07170 WP_339156952.1 1600640..1601566(-) (amiD) [Streptococcus sp. FSL R7-0248]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKAFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=966178 NYE32_RS07170 WP_339156952.1 1600640..1601566(-) (amiD) [Streptococcus sp. FSL R7-0248]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGTATCTTGATTGCCATCG
TTTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGGCCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
CATTCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCGCAACTTGTGTCAGTTATCGTAACTATGGCTAGTCAACTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTGGGGCTTCCAGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAAAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATTCTCGTTTCCCTTGCCCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.052

100

0.981
  amiD Streptococcus thermophilus LMG 18311

97.078

100

0.971
  amiD Streptococcus thermophilus LMD-9

97.078

100

0.971

Multiple sequence alignment