Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   NYE32_RS07165 Genome accession   NZ_CP150201
Coordinates   1599545..1600630 (-) Length   361 a.a.
NCBI ID   WP_002884363.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1594545..1605630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS07135 (NYE32_07135) - 1594908..1595726 (-) 819 WP_064521040.1 Cof-type HAD-IIB family hydrolase -
  NYE32_RS07140 (NYE32_07140) - 1595719..1596513 (-) 795 WP_021143816.1 HAD family hydrolase -
  NYE32_RS07145 (NYE32_07145) - 1596695..1597072 (+) 378 WP_021143815.1 GntR family transcriptional regulator -
  NYE32_RS07150 (NYE32_07150) - 1597077..1597775 (+) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  NYE32_RS07155 (NYE32_07155) - 1597787..1598572 (+) 786 WP_070576856.1 ABC transporter permease -
  NYE32_RS07160 (NYE32_07160) amiF 1598623..1599552 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  NYE32_RS07165 (NYE32_07165) amiE 1599545..1600630 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  NYE32_RS07170 (NYE32_07170) amiD 1600640..1601566 (-) 927 WP_339156952.1 oligopeptide ABC transporter permease OppC Regulator
  NYE32_RS07175 (NYE32_07175) amiC 1601566..1603059 (-) 1494 WP_060971834.1 ABC transporter permease Regulator
  NYE32_RS07180 (NYE32_07180) amiA 1603120..1605090 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39919.63 Da        Isoelectric Point: 4.6526

>NTDB_id=966177 NYE32_RS07165 WP_002884363.1 1599545..1600630(-) (amiE) [Streptococcus sp. FSL R7-0248]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAPIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=966177 NYE32_RS07165 WP_002884363.1 1599545..1600630(-) (amiE) [Streptococcus sp. FSL R7-0248]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTAT
TGACTAAGACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTAGCCAGCGGTTCTATTGATTATCGTGGTCAGGATTTG
ACTAAGCTTAAGAGTCACCAAGATTGGGCACCTATTCGTGGGGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCTGCTAAAGAAGCTA
AAAAAATGGCCATTGACTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTAAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCGGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAGATTGACTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.723

100

0.997

  amiE Streptococcus thermophilus LMG 18311

96.953

100

0.97

  amiE Streptococcus thermophilus LMD-9

96.953

100

0.97

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment