Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NYE32_RS07160 Genome accession   NZ_CP150201
Coordinates   1598623..1599552 (-) Length   309 a.a.
NCBI ID   WP_021143812.1    Uniprot ID   A0AAX2V221
Organism   Streptococcus sp. FSL R7-0248     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593623..1604552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS07135 (NYE32_07135) - 1594908..1595726 (-) 819 WP_064521040.1 Cof-type HAD-IIB family hydrolase -
  NYE32_RS07140 (NYE32_07140) - 1595719..1596513 (-) 795 WP_021143816.1 HAD family hydrolase -
  NYE32_RS07145 (NYE32_07145) - 1596695..1597072 (+) 378 WP_021143815.1 GntR family transcriptional regulator -
  NYE32_RS07150 (NYE32_07150) - 1597077..1597775 (+) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  NYE32_RS07155 (NYE32_07155) - 1597787..1598572 (+) 786 WP_070576856.1 ABC transporter permease -
  NYE32_RS07160 (NYE32_07160) amiF 1598623..1599552 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  NYE32_RS07165 (NYE32_07165) amiE 1599545..1600630 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  NYE32_RS07170 (NYE32_07170) amiD 1600640..1601566 (-) 927 WP_339156952.1 oligopeptide ABC transporter permease OppC Regulator
  NYE32_RS07175 (NYE32_07175) amiC 1601566..1603059 (-) 1494 WP_060971834.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35005.11 Da        Isoelectric Point: 6.8971

>NTDB_id=966176 NYE32_RS07160 WP_021143812.1 1598623..1599552(-) (amiF) [Streptococcus sp. FSL R7-0248]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=966176 NYE32_RS07160 WP_021143812.1 1598623..1599552(-) (amiF) [Streptococcus sp. FSL R7-0248]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTATCTCACTCT
GAGAAAAACGACCTTATACGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCAAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTATCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCGGACTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

100

100

1
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977

Multiple sequence alignment