Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NSQ79_RS09560 Genome accession   NZ_CP150200
Coordinates   2044738..2045838 (-) Length   366 a.a.
NCBI ID   WP_138261574.1    Uniprot ID   A0AAW7PH61
Organism   Streptococcus sp. FSL W7-1342     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039738..2050838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS09520 (NSQ79_09520) - 2040347..2040544 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  NSQ79_RS09525 (NSQ79_09525) - 2040795..2041988 (-) 1194 WP_138261572.1 acetate kinase -
  NSQ79_RS09530 (NSQ79_09530) comYH 2042045..2043001 (-) 957 WP_138261573.1 class I SAM-dependent methyltransferase Machinery gene
  NSQ79_RS09535 (NSQ79_09535) comGG 2043046..2043363 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  NSQ79_RS09540 (NSQ79_09540) comYF 2043341..2043778 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  NSQ79_RS09545 (NSQ79_09545) comGE 2043765..2043995 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  NSQ79_RS09550 (NSQ79_09550) comYD 2044027..2044455 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  NSQ79_RS09555 (NSQ79_09555) comYC 2044415..2044729 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ79_RS09560 (NSQ79_09560) comYB 2044738..2045838 (-) 1101 WP_138261574.1 competence type IV pilus assembly protein ComGB Machinery gene
  NSQ79_RS09565 (NSQ79_09565) comGA/cglA/cilD 2045720..2046661 (-) 942 WP_002887018.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ79_RS09570 (NSQ79_09570) - 2046741..2047103 (-) 363 WP_049529260.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41751.02 Da        Isoelectric Point: 10.1478

>NTDB_id=966131 NSQ79_RS09560 WP_138261574.1 2044738..2045838(-) (comYB) [Streptococcus sp. FSL W7-1342]
MPVKISKVIRQPVGTSSWKAWLNKDISLKGISKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKENWAVQLVQIFPQLFFVILCGLLVLSLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYMTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QTFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=966131 NSQ79_RS09560 WP_138261574.1 2044738..2045838(-) (comYB) [Streptococcus sp. FSL W7-1342]
TTGCCAGTGAAAATTTCCAAAGTCATTCGTCAACCAGTTGGAACCAGCAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAACTCAAGGTTATCCAGCTTTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCCTTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGTGACAGGTTGGACCAGATGTTTGCGTCAGTGGGCTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACTAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTACCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTCTGCCTCAACTGTTAGAGGGGGATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTCTT
TTTTGTGATTTTGTGCGGACTGCTTGTATTAAGCTTAATTCTCTATCTATGGGTGAAACGCCAGTCAGCCCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATATGACCGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCCCTAATGAAAGAGCAAAAATCAAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGACTTTCTTCAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.394

93.716

0.519
  comYB Streptococcus mutans UA159

55.394

93.716

0.519
  comYB Streptococcus gordonii str. Challis substr. CH1

51.312

93.716

0.481
  comGB/cglB Streptococcus mitis NCTC 12261

50

92.35

0.462
  comGB/cglB Streptococcus mitis SK321

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae Rx1

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae D39

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae R6

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae TIGR4

49.112

92.35

0.454
  comGB Lactococcus lactis subsp. cremoris KW2

44.985

89.891

0.404

Multiple sequence alignment