Detailed information NTG0966128

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: NSQ79_RS09540
• Genome accession: NZ_CP150200
• Coordinates: 2043341..2043778 (-)
• Length: 145 a.a.
• NCBI ID: WP_045769383.1
• Uniprot ID: -
• Organism: Streptococcus sp. FSL W7-1342
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2038341..2048778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NSQ79_RS09505 (NSQ79_09505)	-	2038380..2039042 (-)	663	WP_111686674.1	type II CAAX endopeptidase family protein	-
NSQ79_RS09510 (NSQ79_09510)	-	2039155..2039601 (-)	447	WP_013991259.1	hypothetical protein	-
NSQ79_RS09515 (NSQ79_09515)	-	2039679..2040335 (-)	657	WP_037601483.1	type II CAAX endopeptidase family protein	-
NSQ79_RS09520 (NSQ79_09520)	-	2040347..2040544 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
NSQ79_RS09525 (NSQ79_09525)	-	2040795..2041988 (-)	1194	WP_138261572.1	acetate kinase	-
NSQ79_RS09530 (NSQ79_09530)	comYH	2042045..2043001 (-)	957	WP_138261573.1	class I SAM-dependent methyltransferase	Machinery gene
NSQ79_RS09535 (NSQ79_09535)	comGG	2043046..2043363 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
NSQ79_RS09540 (NSQ79_09540)	comYF	2043341..2043778 (-)	438	WP_045769383.1	competence type IV pilus minor pilin ComGF	Machinery gene
NSQ79_RS09545 (NSQ79_09545)	comGE	2043765..2043995 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
NSQ79_RS09550 (NSQ79_09550)	comYD	2044027..2044455 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
NSQ79_RS09555 (NSQ79_09555)	comYC	2044415..2044729 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
NSQ79_RS09560 (NSQ79_09560)	comYB	2044738..2045838 (-)	1101	WP_138261574.1	competence type IV pilus assembly protein ComGB	Machinery gene
NSQ79_RS09565 (NSQ79_09565)	comGA/cglA/cilD	2045720..2046661 (-)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
NSQ79_RS09570 (NSQ79_09570)	-	2046741..2047103 (-)	363	WP_049529260.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16182.60 Da
• Isoelectric Point: 8.4658

>NTDB_id=966128 NSQ79_RS09540 WP_045769383.1 2043341..2043778(-) (comYF) [Streptococcus sp. FSL W7-1342]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=966128 NSQ79_RS09540 WP_045769383.1 2043341..2043778(-) (comYF) [Streptococcus sp. FSL W7-1342]
ATGTCTCTCAATAGCAAGGTTCGTGCTTTTACCCTCTTGGAATGTCTAGTAGCTCTATTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTCCTAT
TTGTCCAACAAATGGAGGCAGAGTTAGAAGGTTGTCAGTTGGTAAAGGTAGAAGGGAACAAGCTCTATGTTAAGCAGGAT
AATCAAGACCTGGCTTTTGGCCTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAAGCTAGTACAATTAGTCAAAATAACCAGATAGTCACCATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae Rx1	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae D39	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae R6	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae TIGR4	50	97.931	0.49
comGF/cglF	Streptococcus mitis SK321	47.222	99.31	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.222	99.31	0.469
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434