Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NST56_RS18460 Genome accession   NZ_CP150195
Coordinates   3510994..3511590 (+) Length   198 a.a.
NCBI ID   WP_003326811.1    Uniprot ID   A0AAP3CU21
Organism   Bacillus sp. FSL R5-0560     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505994..3516590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS18440 (NST56_18440) - 3506778..3508127 (-) 1350 WP_268449901.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  NST56_RS18445 (NST56_18445) - 3508146..3508814 (-) 669 WP_229149355.1 DUF5819 family protein -
  NST56_RS18450 (NST56_18450) - 3508870..3509184 (-) 315 WP_229149357.1 hypothetical protein -
  NST56_RS18460 (NST56_18460) clpP 3510994..3511590 (+) 597 WP_003326811.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NST56_RS18465 (NST56_18465) pgmB 3511707..3512387 (-) 681 WP_268472079.1 beta-phosphoglucomutase -
  NST56_RS18470 (NST56_18470) - 3512384..3514069 (-) 1686 WP_339178334.1 alpha-glucosidase -
  NST56_RS18475 (NST56_18475) - 3514062..3516335 (-) 2274 WP_339178336.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21877.15 Da        Isoelectric Point: 4.7114

>NTDB_id=965874 NST56_RS18460 WP_003326811.1 3510994..3511590(+) (clpP) [Bacillus sp. FSL R5-0560]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEAMEYGLIDKVLTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=965874 NST56_RS18460 WP_003326811.1 3510994..3511590(+) (clpP) [Bacillus sp. FSL R5-0560]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTTTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG
AAGACCCTGAAAAAGATATTTCTATTTATATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATTTATGATACC
ATGCAGTTTATTAAGCCAAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGTGCGTTCCTGCTTGCTGCCGG
AGAAAAAGGCAAACGCTATGCGCTTCCTAACAGTGAAGTTATGATTCACCAGCCACTTGGCGGAGCGCAAGGTCAGGCAA
CAGAAATTGAAATTGCTGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGCACAGGCCAG
CCGCTTGAAGTCATTGAGCGCGATACTGACCGCGATAACTTCAAATCAGCCGAAGAAGCAATGGAATACGGCTTGATTGA
TAAGGTTTTGACACGCAACACAGAAGAGCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.455

100

0.955
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Streptococcus pneumoniae Rx1

56.701

97.98

0.556
  clpP Streptococcus pneumoniae D39

56.701

97.98

0.556
  clpP Streptococcus pneumoniae R6

56.701

97.98

0.556
  clpP Streptococcus pneumoniae TIGR4

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.124

97.98

0.53
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53

Multiple sequence alignment