Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NSQ36_RS16485 Genome accession   NZ_CP150182
Coordinates   3206625..3207131 (-) Length   168 a.a.
NCBI ID   WP_339207374.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1143     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3201625..3212131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS16450 (NSQ36_16450) fliW 3201758..3202192 (-) 435 WP_050944340.1 flagellar assembly protein FliW -
  NSQ36_RS16455 (NSQ36_16455) - 3202221..3202799 (-) 579 WP_003213106.1 DUF6470 family protein -
  NSQ36_RS16460 (NSQ36_16460) flgL 3202848..3203759 (-) 912 WP_003213719.1 flagellar hook-associated protein FlgL -
  NSQ36_RS16465 (NSQ36_16465) flgK 3203769..3205289 (-) 1521 WP_003213544.1 flagellar hook-associated protein FlgK -
  NSQ36_RS16470 (NSQ36_16470) - 3205305..3205787 (-) 483 WP_050944342.1 flagellar protein FlgN -
  NSQ36_RS16475 (NSQ36_16475) flgM 3205806..3206069 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ36_RS16480 (NSQ36_16480) - 3206149..3206568 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  NSQ36_RS16485 (NSQ36_16485) comFC 3206625..3207131 (-) 507 WP_339207374.1 ComF family protein Machinery gene
  NSQ36_RS16490 (NSQ36_16490) - 3207144..3207311 (-) 168 Protein_3191 ComF family protein -
  NSQ36_RS16495 (NSQ36_16495) - 3207308..3207601 (-) 294 WP_050944343.1 competence protein ComFB -
  NSQ36_RS16500 (NSQ36_16500) comFA 3207668..3209047 (-) 1380 WP_339206148.1 DEAD/DEAH box helicase Machinery gene
  NSQ36_RS16505 (NSQ36_16505) - 3209167..3210009 (-) 843 WP_339206151.1 DegV family protein -
  NSQ36_RS16510 (NSQ36_16510) degU 3210227..3210916 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19261.50 Da        Isoelectric Point: 10.5562

>NTDB_id=965313 NSQ36_RS16485 WP_339207374.1 3206625..3207131(-) (comFC) [Bacillus sp. FSL W8-1143]
MWKERPDSTTVLVKNRSVYAYNDLMKDVLSRFKFRGDTALAELFKQDVRAVFKRSFSMKEPVLIPIPLSKERLKERGFNQ
SVILASLIGEPILQPLVKIHQSKQSKKKKNERLDQKGMFQIKQADEIVQRDVILIDDIYTTGATIYDAARILKEAGAKSV
SSFTLIRS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=965313 NSQ36_RS16485 WP_339207374.1 3206625..3207131(-) (comFC) [Bacillus sp. FSL W8-1143]
ATGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCTTACAACGATTTGATGAAAGA
TGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGATGTCCGAGCAGTATTTAAGC
GCTCTTTTTCAATGAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAAAGGAAAGAGGGTTTAATCAG
TCCGTCATACTTGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCACTTGTAAAAATACATCAAAGCAAACAGTCCAAGAA
AAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGGCAGATGAAATCGTTCAAAGGGATGTTATCT
TAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAGAAGCAGGTGCCAAAAGTGTT
TCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(75-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.071

100

0.524
  comFC/cflB Streptococcus mitis NCTC 12261

42.038

93.452

0.393
  comFC/cflB Streptococcus mitis SK321

41.401

93.452

0.387
  comFC/cflB Streptococcus pneumoniae Rx1

41.401

93.452

0.387
  comFC/cflB Streptococcus pneumoniae D39

41.401

93.452

0.387
  comFC/cflB Streptococcus pneumoniae R6

41.401

93.452

0.387
  comFC/cflB Streptococcus pneumoniae TIGR4

41.401

93.452

0.387

Multiple sequence alignment