Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ36_RS16500 Genome accession   NZ_CP150182
Coordinates   3207668..3209047 (-) Length   459 a.a.
NCBI ID   WP_339206148.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1143     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202668..3214047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS16460 (NSQ36_16460) flgL 3202848..3203759 (-) 912 WP_003213719.1 flagellar hook-associated protein FlgL -
  NSQ36_RS16465 (NSQ36_16465) flgK 3203769..3205289 (-) 1521 WP_003213544.1 flagellar hook-associated protein FlgK -
  NSQ36_RS16470 (NSQ36_16470) - 3205305..3205787 (-) 483 WP_050944342.1 flagellar protein FlgN -
  NSQ36_RS16475 (NSQ36_16475) flgM 3205806..3206069 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ36_RS16480 (NSQ36_16480) - 3206149..3206568 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  NSQ36_RS16485 (NSQ36_16485) comFC 3206625..3207131 (-) 507 WP_339207374.1 ComF family protein Machinery gene
  NSQ36_RS16490 (NSQ36_16490) - 3207144..3207311 (-) 168 Protein_3191 ComF family protein -
  NSQ36_RS16495 (NSQ36_16495) - 3207308..3207601 (-) 294 WP_050944343.1 competence protein ComFB -
  NSQ36_RS16500 (NSQ36_16500) comFA 3207668..3209047 (-) 1380 WP_339206148.1 DEAD/DEAH box helicase Machinery gene
  NSQ36_RS16505 (NSQ36_16505) - 3209167..3210009 (-) 843 WP_339206151.1 DegV family protein -
  NSQ36_RS16510 (NSQ36_16510) degU 3210227..3210916 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ36_RS16515 (NSQ36_16515) degS 3210981..3212156 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ36_RS16520 (NSQ36_16520) - 3212378..3213046 (+) 669 WP_339206153.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52373.29 Da        Isoelectric Point: 10.1706

>NTDB_id=965314 NSQ36_RS16500 WP_339206148.1 3207668..3209047(-) (comFA) [Bacillus sp. FSL W8-1143]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLDWLEEKGLVIRTPAIERKANGLICCRCGVSKNRYFAHSSCDKCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEEACHSELTWQGNLSKGQKRASEKLIEAIKNKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDG
RLQFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDYKYDVLVTTTILERGVTISNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=965314 NSQ36_RS16500 WP_339206148.1 3207668..3209047(-) (comFA) [Bacillus sp. FSL W8-1143]
TTGAACATGGACAAAGCAATGGAACTAGGGCAACACCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGCTGGAGGAGAAAGGGTTAGTTATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTTCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAGCATG
TCACTCGGAATTAACATGGCAGGGAAACCTGTCGAAAGGACAAAAAAGAGCGTCAGAGAAATTGATCGAAGCGATAAAAA
ACAAATCTGATCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCTTT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGTTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACACGCATTTGATGTGCTCATTATAGATGAAGTCGACGCCTTCCCTTATTCAATCGATGGA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAATCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATTACAAAAAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTCCAGCAATTCAGAGATTACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGTGTAACCATTTCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.286

99.129

0.538

Multiple sequence alignment