Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ36_RS16510 Genome accession   NZ_CP150182
Coordinates   3210227..3210916 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL W8-1143     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3205227..3215916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS16470 (NSQ36_16470) - 3205305..3205787 (-) 483 WP_050944342.1 flagellar protein FlgN -
  NSQ36_RS16475 (NSQ36_16475) flgM 3205806..3206069 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ36_RS16480 (NSQ36_16480) - 3206149..3206568 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  NSQ36_RS16485 (NSQ36_16485) comFC 3206625..3207131 (-) 507 WP_339207374.1 ComF family protein Machinery gene
  NSQ36_RS16490 (NSQ36_16490) - 3207144..3207311 (-) 168 Protein_3191 ComF family protein -
  NSQ36_RS16495 (NSQ36_16495) - 3207308..3207601 (-) 294 WP_050944343.1 competence protein ComFB -
  NSQ36_RS16500 (NSQ36_16500) comFA 3207668..3209047 (-) 1380 WP_339206148.1 DEAD/DEAH box helicase Machinery gene
  NSQ36_RS16505 (NSQ36_16505) - 3209167..3210009 (-) 843 WP_339206151.1 DegV family protein -
  NSQ36_RS16510 (NSQ36_16510) degU 3210227..3210916 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ36_RS16515 (NSQ36_16515) degS 3210981..3212156 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ36_RS16520 (NSQ36_16520) - 3212378..3213046 (+) 669 WP_339206153.1 YigZ family protein -
  NSQ36_RS16525 (NSQ36_16525) - 3213031..3214119 (+) 1089 WP_212045589.1 LCP family protein -
  NSQ36_RS16530 (NSQ36_16530) - 3214154..3215221 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=965315 NSQ36_RS16510 WP_008348273.1 3210227..3210916(-) (degU) [Bacillus sp. FSL W8-1143]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=965315 NSQ36_RS16510 WP_008348273.1 3210227..3210916(-) (degU) [Bacillus sp. FSL W8-1143]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment